Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
CBX4O00257 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CBX4O00257 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.94■■□□□ 1.9
CBX4O00257 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.94■■□□□ 1.9
CBX4O00257 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CBX4O00257 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
CBX4O00257 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.94■■□□□ 1.9
CBX4O00257 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CBX4O00257 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
CBX4O00257 MIR6090-201ENST00000622481 60 ntBASIC26.93■■□□□ 1.9
CBX4O00257 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.92■■□□□ 1.9
CBX4O00257 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
CBX4O00257 AC010864.1-201ENST00000609407 1511 ntBASIC26.91■■□□□ 1.9
CBX4O00257 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.91■■□□□ 1.9
CBX4O00257 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CBX4O00257 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CBX4O00257 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.9■■□□□ 1.9
CBX4O00257 AL135925.1-201ENST00000605920 1701 ntBASIC26.9■■□□□ 1.9
CBX4O00257 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
CBX4O00257 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.89■■□□□ 1.9
CBX4O00257 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.89■■□□□ 1.9
CBX4O00257 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CBX4O00257 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CBX4O00257 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.88■■□□□ 1.89
CBX4O00257 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.87■■□□□ 1.89
CBX4O00257 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
CBX4O00257 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CBX4O00257 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CBX4O00257 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CBX4O00257 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CBX4O00257 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.82■■□□□ 1.88
CBX4O00257 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.82■■□□□ 1.88
CBX4O00257 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CBX4O00257 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CBX4O00257 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.8■■□□□ 1.88
CBX4O00257 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.8■■□□□ 1.88
CBX4O00257 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CBX4O00257 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.8■■□□□ 1.88
CBX4O00257 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.8■■□□□ 1.88
CBX4O00257 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
CBX4O00257 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.79■■□□□ 1.88
CBX4O00257 DUX4L29-201ENST00000425409 679 ntBASIC26.79■■□□□ 1.88
CBX4O00257 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.79■■□□□ 1.88
CBX4O00257 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
CBX4O00257 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CBX4O00257 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.77■■□□□ 1.88
CBX4O00257 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CBX4O00257 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.77■■□□□ 1.88
CBX4O00257 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.76■■□□□ 1.88
CBX4O00257 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.76■■□□□ 1.87
CBX4O00257 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CBX4O00257 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CBX4O00257 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.75■■□□□ 1.87
CBX4O00257 AC021231.2-201ENST00000594613 730 ntBASIC26.75■■□□□ 1.87
CBX4O00257 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
CBX4O00257 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.74■■□□□ 1.87
CBX4O00257 HLA-V-202ENST00000446817 847 ntBASIC26.74■■□□□ 1.87
CBX4O00257 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.74■■□□□ 1.87
CBX4O00257 ST7-AS1-201ENST00000456775 1889 ntBASIC26.73■■□□□ 1.87
CBX4O00257 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CBX4O00257 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
CBX4O00257 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CBX4O00257 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CBX4O00257 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CBX4O00257 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CBX4O00257 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CBX4O00257 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CBX4O00257 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CBX4O00257 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CBX4O00257 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
CBX4O00257 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.67■■□□□ 1.86
CBX4O00257 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
CBX4O00257 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CBX4O00257 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CBX4O00257 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CBX4O00257 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CBX4O00257 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CBX4O00257 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CBX4O00257 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CBX4O00257 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CBX4O00257 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
CBX4O00257 ZNRF2P2-203ENST00000454624 420 ntBASIC26.65■■□□□ 1.86
CBX4O00257 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.65■■□□□ 1.86
CBX4O00257 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CBX4O00257 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.65■■□□□ 1.86
CBX4O00257 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CBX4O00257 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
CBX4O00257 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CBX4O00257 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CBX4O00257 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.62■■□□□ 1.85
CBX4O00257 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.62■■□□□ 1.85
CBX4O00257 ABCB10P1-201ENST00000614297 2181 ntBASIC26.61■■□□□ 1.85
CBX4O00257 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.61■■□□□ 1.85
CBX4O00257 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
CBX4O00257 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.61■■□□□ 1.85
CBX4O00257 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CBX4O00257 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
CBX4O00257 AC127502.1-201ENST00000399971 1502 ntBASIC26.6■■□□□ 1.85
CBX4O00257 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
CBX4O00257 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms