Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.32■■□□□ 1
COL6A5A8TX70 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.31■■□□□ 1
COL6A5A8TX70 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.3■■□□□ 1
COL6A5A8TX70 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.29■■□□□ 1
COL6A5A8TX70 RARRES2P1-201ENST00000474487 481 ntBASIC21.29■■□□□ 1
COL6A5A8TX70 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL6A5A8TX70 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL6A5A8TX70 AC008813.1-201ENST00000536597 885 ntBASIC21.28■■□□□ 1
COL6A5A8TX70 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.28■■□□□ 1
COL6A5A8TX70 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.27■■□□□ 1
COL6A5A8TX70 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
COL6A5A8TX70 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.26■□□□□ 0.99
COL6A5A8TX70 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A5A8TX70 TSPY13P-201ENST00000338964 914 ntBASIC21.25■□□□□ 0.99
COL6A5A8TX70 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A5A8TX70 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.23■□□□□ 0.99
COL6A5A8TX70 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A5A8TX70 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A5A8TX70 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
COL6A5A8TX70 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A5A8TX70 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A5A8TX70 AL035685.1-201ENST00000636663 812 ntBASIC21.22■□□□□ 0.99
COL6A5A8TX70 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.22■□□□□ 0.99
COL6A5A8TX70 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A5A8TX70 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A5A8TX70 MIR935-201ENST00000401179 91 ntBASIC21.21■□□□□ 0.99
COL6A5A8TX70 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A5A8TX70 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A5A8TX70 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A5A8TX70 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.21■□□□□ 0.99
COL6A5A8TX70 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL6A5A8TX70 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.21■□□□□ 0.99
COL6A5A8TX70 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL6A5A8TX70 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL6A5A8TX70 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL6A5A8TX70 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL6A5A8TX70 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A5A8TX70 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A5A8TX70 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A5A8TX70 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.17■□□□□ 0.98
COL6A5A8TX70 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL6A5A8TX70 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.16■□□□□ 0.98
COL6A5A8TX70 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A5A8TX70 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A5A8TX70 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL6A5A8TX70 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL6A5A8TX70 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.14■□□□□ 0.98
COL6A5A8TX70 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.14■□□□□ 0.98
COL6A5A8TX70 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.14■□□□□ 0.97
COL6A5A8TX70 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL6A5A8TX70 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.13■□□□□ 0.97
COL6A5A8TX70 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL6A5A8TX70 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL6A5A8TX70 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL6A5A8TX70 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.12■□□□□ 0.97
COL6A5A8TX70 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL6A5A8TX70 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL6A5A8TX70 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.1■□□□□ 0.97
COL6A5A8TX70 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL6A5A8TX70 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.1■□□□□ 0.97
COL6A5A8TX70 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.1■□□□□ 0.97
COL6A5A8TX70 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL6A5A8TX70 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.09■□□□□ 0.97
COL6A5A8TX70 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL6A5A8TX70 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.09■□□□□ 0.97
COL6A5A8TX70 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL6A5A8TX70 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL6A5A8TX70 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
COL6A5A8TX70 KRT18P60-201ENST00000312876 1297 ntBASIC21.07■□□□□ 0.96
COL6A5A8TX70 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A5A8TX70 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A5A8TX70 AC022413.1-201ENST00000624602 984 ntBASIC21.07■□□□□ 0.96
COL6A5A8TX70 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL6A5A8TX70 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A5A8TX70 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL6A5A8TX70 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A5A8TX70 AL451085.2-201ENST00000605085 799 ntBASIC21.05■□□□□ 0.96
COL6A5A8TX70 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A5A8TX70 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.04■□□□□ 0.96
COL6A5A8TX70 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A5A8TX70 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A5A8TX70 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A5A8TX70 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A5A8TX70 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.03■□□□□ 0.96
COL6A5A8TX70 AC004987.1-201ENST00000428627 508 ntBASIC21.02■□□□□ 0.96
COL6A5A8TX70 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.02■□□□□ 0.96
COL6A5A8TX70 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A5A8TX70 ATP5G2P3-201ENST00000429083 425 ntBASIC21■□□□□ 0.95
COL6A5A8TX70 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A5A8TX70 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21■□□□□ 0.95
COL6A5A8TX70 U85056.1-201ENST00000616429 682 ntBASIC20.99■□□□□ 0.95
COL6A5A8TX70 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A5A8TX70 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A5A8TX70 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.98■□□□□ 0.95
COL6A5A8TX70 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
COL6A5A8TX70 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A5A8TX70 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL6A5A8TX70 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
COL6A5A8TX70 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL6A5A8TX70 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms