Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
PCDHA2Q9Y5H9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
PCDHA2Q9Y5H9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
PCDHA2Q9Y5H9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
PCDHA2Q9Y5H9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
PCDHA2Q9Y5H9 AC044849.2-201ENST00000606596 710 ntBASIC30.07■■■□□ 2.4
PCDHA2Q9Y5H9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
PCDHA2Q9Y5H9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
PCDHA2Q9Y5H9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.06■■■□□ 2.4
PCDHA2Q9Y5H9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
PCDHA2Q9Y5H9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
PCDHA2Q9Y5H9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
PCDHA2Q9Y5H9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
PCDHA2Q9Y5H9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.01■■■□□ 2.39
PCDHA2Q9Y5H9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30■■■□□ 2.39
PCDHA2Q9Y5H9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30■■■□□ 2.39
PCDHA2Q9Y5H9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
PCDHA2Q9Y5H9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
PCDHA2Q9Y5H9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.99■■■□□ 2.39
PCDHA2Q9Y5H9 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
PCDHA2Q9Y5H9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
PCDHA2Q9Y5H9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
PCDHA2Q9Y5H9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
PCDHA2Q9Y5H9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
PCDHA2Q9Y5H9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
PCDHA2Q9Y5H9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
PCDHA2Q9Y5H9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
PCDHA2Q9Y5H9 ABHD17AP4-201ENST00000411545 909 ntBASIC29.95■■■□□ 2.39
PCDHA2Q9Y5H9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
PCDHA2Q9Y5H9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.94■■■□□ 2.38
PCDHA2Q9Y5H9 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
PCDHA2Q9Y5H9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
PCDHA2Q9Y5H9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
PCDHA2Q9Y5H9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC29.92■■■□□ 2.38
PCDHA2Q9Y5H9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
PCDHA2Q9Y5H9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
PCDHA2Q9Y5H9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC29.91■■■□□ 2.38
PCDHA2Q9Y5H9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
PCDHA2Q9Y5H9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
PCDHA2Q9Y5H9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.88■■■□□ 2.37
PCDHA2Q9Y5H9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
PCDHA2Q9Y5H9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.87■■■□□ 2.37
PCDHA2Q9Y5H9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.86■■■□□ 2.37
PCDHA2Q9Y5H9 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
PCDHA2Q9Y5H9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCDHA2Q9Y5H9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCDHA2Q9Y5H9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC29.84■■■□□ 2.37
PCDHA2Q9Y5H9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCDHA2Q9Y5H9 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.84■■■□□ 2.37
PCDHA2Q9Y5H9 AL161658.1-201ENST00000623641 1967 ntBASIC29.83■■■□□ 2.37
PCDHA2Q9Y5H9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
PCDHA2Q9Y5H9 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
PCDHA2Q9Y5H9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.81■■■□□ 2.36
PCDHA2Q9Y5H9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.81■■■□□ 2.36
PCDHA2Q9Y5H9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.81■■■□□ 2.36
PCDHA2Q9Y5H9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
PCDHA2Q9Y5H9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC29.81■■■□□ 2.36
PCDHA2Q9Y5H9 MIR7108-201ENST00000614319 87 ntBASIC29.8■■■□□ 2.36
PCDHA2Q9Y5H9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCDHA2Q9Y5H9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
PCDHA2Q9Y5H9 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PCDHA2Q9Y5H9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PCDHA2Q9Y5H9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PCDHA2Q9Y5H9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHA2Q9Y5H9 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHA2Q9Y5H9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC29.78■■■□□ 2.36
PCDHA2Q9Y5H9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHA2Q9Y5H9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC29.78■■■□□ 2.36
PCDHA2Q9Y5H9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCDHA2Q9Y5H9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCDHA2Q9Y5H9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.77■■■□□ 2.36
PCDHA2Q9Y5H9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.76■■■□□ 2.35
PCDHA2Q9Y5H9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.75■■■□□ 2.35
PCDHA2Q9Y5H9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.75■■■□□ 2.35
PCDHA2Q9Y5H9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.75■■■□□ 2.35
PCDHA2Q9Y5H9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
PCDHA2Q9Y5H9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.74■■■□□ 2.35
PCDHA2Q9Y5H9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
PCDHA2Q9Y5H9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.73■■■□□ 2.35
PCDHA2Q9Y5H9 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.73■■■□□ 2.35
PCDHA2Q9Y5H9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
PCDHA2Q9Y5H9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
PCDHA2Q9Y5H9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.73■■■□□ 2.35
PCDHA2Q9Y5H9 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.73■■■□□ 2.35
PCDHA2Q9Y5H9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
PCDHA2Q9Y5H9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
PCDHA2Q9Y5H9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC29.71■■■□□ 2.35
PCDHA2Q9Y5H9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
PCDHA2Q9Y5H9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
PCDHA2Q9Y5H9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
PCDHA2Q9Y5H9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.69■■■□□ 2.34
PCDHA2Q9Y5H9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
PCDHA2Q9Y5H9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.68■■■□□ 2.34
PCDHA2Q9Y5H9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
PCDHA2Q9Y5H9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.67■■■□□ 2.34
PCDHA2Q9Y5H9 ZNRF2P2-203ENST00000454624 420 ntBASIC29.66■■■□□ 2.34
PCDHA2Q9Y5H9 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
PCDHA2Q9Y5H9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
PCDHA2Q9Y5H9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
PCDHA2Q9Y5H9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms