Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOTCH3Q9UM47 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.52■□□□□ 0.87
NOTCH3Q9UM47 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOTCH3Q9UM47 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOTCH3Q9UM47 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.51■□□□□ 0.87
NOTCH3Q9UM47 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NOTCH3Q9UM47 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
NOTCH3Q9UM47 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NOTCH3Q9UM47 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NOTCH3Q9UM47 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC20.49■□□□□ 0.87
NOTCH3Q9UM47 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NOTCH3Q9UM47 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NOTCH3Q9UM47 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NOTCH3Q9UM47 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NOTCH3Q9UM47 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NOTCH3Q9UM47 HSD17B1P1-201ENST00000590052 955 ntBASIC20.46■□□□□ 0.87
NOTCH3Q9UM47 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NOTCH3Q9UM47 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.45■□□□□ 0.86
NOTCH3Q9UM47 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.44■□□□□ 0.86
NOTCH3Q9UM47 CR559946.2-201ENST00000623684 991 ntBASIC20.44■□□□□ 0.86
NOTCH3Q9UM47 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NOTCH3Q9UM47 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.44■□□□□ 0.86
NOTCH3Q9UM47 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 AC108673.1-201ENST00000510422 1159 ntBASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.43■□□□□ 0.86
NOTCH3Q9UM47 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.42■□□□□ 0.86
NOTCH3Q9UM47 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NOTCH3Q9UM47 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.41■□□□□ 0.86
NOTCH3Q9UM47 AC016575.1-201ENST00000607026 382 ntBASIC20.41■□□□□ 0.86
NOTCH3Q9UM47 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NOTCH3Q9UM47 MIR6090-201ENST00000622481 60 ntBASIC20.41■□□□□ 0.86
NOTCH3Q9UM47 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NOTCH3Q9UM47 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NOTCH3Q9UM47 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.39■□□□□ 0.85
NOTCH3Q9UM47 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NOTCH3Q9UM47 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.38■□□□□ 0.85
NOTCH3Q9UM47 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NOTCH3Q9UM47 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC20.36■□□□□ 0.85
NOTCH3Q9UM47 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NOTCH3Q9UM47 LINC01971-201ENST00000617888 1048 ntBASIC20.36■□□□□ 0.85
NOTCH3Q9UM47 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NOTCH3Q9UM47 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NOTCH3Q9UM47 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NOTCH3Q9UM47 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NOTCH3Q9UM47 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NOTCH3Q9UM47 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NOTCH3Q9UM47 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NOTCH3Q9UM47 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NOTCH3Q9UM47 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NOTCH3Q9UM47 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
NOTCH3Q9UM47 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NOTCH3Q9UM47 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NOTCH3Q9UM47 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NOTCH3Q9UM47 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NOTCH3Q9UM47 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NOTCH3Q9UM47 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.32■□□□□ 0.84
NOTCH3Q9UM47 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.32■□□□□ 0.84
NOTCH3Q9UM47 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NOTCH3Q9UM47 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
NOTCH3Q9UM47 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NOTCH3Q9UM47 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NOTCH3Q9UM47 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NOTCH3Q9UM47 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.3■□□□□ 0.84
NOTCH3Q9UM47 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
NOTCH3Q9UM47 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NOTCH3Q9UM47 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.3■□□□□ 0.84
NOTCH3Q9UM47 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.29■□□□□ 0.84
NOTCH3Q9UM47 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.28■□□□□ 0.84
NOTCH3Q9UM47 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.28■□□□□ 0.84
NOTCH3Q9UM47 DUX4L11-201ENST00000611504 1267 ntBASIC20.28■□□□□ 0.84
NOTCH3Q9UM47 DUX4L12-201ENST00000614593 1267 ntBASIC20.28■□□□□ 0.84
NOTCH3Q9UM47 DUX4L14-201ENST00000621227 1267 ntBASIC20.28■□□□□ 0.84
NOTCH3Q9UM47 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NOTCH3Q9UM47 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NOTCH3Q9UM47 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
NOTCH3Q9UM47 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.27■□□□□ 0.84
NOTCH3Q9UM47 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
NOTCH3Q9UM47 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.27■□□□□ 0.84
NOTCH3Q9UM47 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.26■□□□□ 0.83
NOTCH3Q9UM47 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.26■□□□□ 0.83
NOTCH3Q9UM47 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NOTCH3Q9UM47 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NOTCH3Q9UM47 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NOTCH3Q9UM47 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.26■□□□□ 0.83
NOTCH3Q9UM47 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NOTCH3Q9UM47 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NOTCH3Q9UM47 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NOTCH3Q9UM47 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NOTCH3Q9UM47 DUX4L13-201ENST00000554103 1267 ntBASIC20.23■□□□□ 0.83
NOTCH3Q9UM47 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms