Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC34.45■■■■□ 3.11
USP42Q9H9J4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
USP42Q9H9J4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
USP42Q9H9J4 MIR6090-201ENST00000622481 60 ntBASIC34.41■■■■□ 3.1
USP42Q9H9J4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.4■■■■□ 3.1
USP42Q9H9J4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
USP42Q9H9J4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.37■■■■□ 3.09
USP42Q9H9J4 AC108673.1-201ENST00000510422 1159 ntBASIC34.36■■■■□ 3.09
USP42Q9H9J4 MIR3648-2-201ENST00000581792 180 ntBASIC34.36■■■■□ 3.09
USP42Q9H9J4 MIR3648-1-201ENST00000615959 180 ntBASIC34.36■■■■□ 3.09
USP42Q9H9J4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC34.35■■■■□ 3.09
USP42Q9H9J4 AC016575.1-201ENST00000607026 382 ntBASIC34.35■■■■□ 3.09
USP42Q9H9J4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC34.35■■■■□ 3.09
USP42Q9H9J4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
USP42Q9H9J4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC34.34■■■■□ 3.09
USP42Q9H9J4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC34.33■■■■□ 3.09
USP42Q9H9J4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC34.33■■■■□ 3.09
USP42Q9H9J4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC34.33■■■■□ 3.09
USP42Q9H9J4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
USP42Q9H9J4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC34.33■■■■□ 3.09
USP42Q9H9J4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.32■■■■□ 3.09
USP42Q9H9J4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
USP42Q9H9J4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
USP42Q9H9J4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
USP42Q9H9J4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC34.3■■■■□ 3.08
USP42Q9H9J4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
USP42Q9H9J4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC34.3■■■■□ 3.08
USP42Q9H9J4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
USP42Q9H9J4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC34.29■■■■□ 3.08
USP42Q9H9J4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC34.29■■■■□ 3.08
USP42Q9H9J4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC34.29■■■■□ 3.08
USP42Q9H9J4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
USP42Q9H9J4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC34.28■■■■□ 3.08
USP42Q9H9J4 CR559946.2-201ENST00000623684 991 ntBASIC34.28■■■■□ 3.08
USP42Q9H9J4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC34.27■■■■□ 3.08
USP42Q9H9J4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC34.26■■■■□ 3.08
USP42Q9H9J4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.26■■■■□ 3.07
USP42Q9H9J4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC34.26■■■■□ 3.07
USP42Q9H9J4 HSD17B1P1-201ENST00000590052 955 ntBASIC34.24■■■■□ 3.07
USP42Q9H9J4 DUX4L11-201ENST00000611504 1267 ntBASIC34.24■■■■□ 3.07
USP42Q9H9J4 DUX4L12-201ENST00000614593 1267 ntBASIC34.24■■■■□ 3.07
USP42Q9H9J4 LINC01971-201ENST00000617888 1048 ntBASIC34.24■■■■□ 3.07
USP42Q9H9J4 DUX4L14-201ENST00000621227 1267 ntBASIC34.24■■■■□ 3.07
USP42Q9H9J4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
USP42Q9H9J4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC34.22■■■■□ 3.07
USP42Q9H9J4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC34.21■■■■□ 3.07
USP42Q9H9J4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC34.21■■■■□ 3.07
USP42Q9H9J4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USP42Q9H9J4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USP42Q9H9J4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USP42Q9H9J4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USP42Q9H9J4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC34.19■■■■□ 3.06
USP42Q9H9J4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC34.19■■■■□ 3.06
USP42Q9H9J4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC34.19■■■■□ 3.06
USP42Q9H9J4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
USP42Q9H9J4 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
USP42Q9H9J4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC34.18■■■■□ 3.06
USP42Q9H9J4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC34.17■■■■□ 3.06
USP42Q9H9J4 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
USP42Q9H9J4 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
USP42Q9H9J4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC34.15■■■■□ 3.06
USP42Q9H9J4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC34.15■■■■□ 3.06
USP42Q9H9J4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC34.14■■■■□ 3.06
USP42Q9H9J4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
USP42Q9H9J4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
USP42Q9H9J4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
USP42Q9H9J4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC34.13■■■■□ 3.05
USP42Q9H9J4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC34.13■■■■□ 3.05
USP42Q9H9J4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
USP42Q9H9J4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
USP42Q9H9J4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC34.11■■■■□ 3.05
USP42Q9H9J4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC34.11■■■■□ 3.05
USP42Q9H9J4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
USP42Q9H9J4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC34.1■■■■□ 3.05
USP42Q9H9J4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
USP42Q9H9J4 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
USP42Q9H9J4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
USP42Q9H9J4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.08■■■■□ 3.05
USP42Q9H9J4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC34.08■■■■□ 3.05
USP42Q9H9J4 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
USP42Q9H9J4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC34.07■■■■□ 3.05
USP42Q9H9J4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
USP42Q9H9J4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC34.05■■■■□ 3.04
USP42Q9H9J4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
USP42Q9H9J4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
USP42Q9H9J4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
USP42Q9H9J4 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC34.03■■■■□ 3.04
USP42Q9H9J4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC34.03■■■■□ 3.04
USP42Q9H9J4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC34.02■■■■□ 3.04
USP42Q9H9J4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
USP42Q9H9J4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC34.02■■■■□ 3.04
USP42Q9H9J4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC34.01■■■■□ 3.03
USP42Q9H9J4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC34.01■■■■□ 3.03
USP42Q9H9J4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC34.01■■■■□ 3.03
USP42Q9H9J4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
USP42Q9H9J4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
USP42Q9H9J4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
USP42Q9H9J4 ABHD17AP3-201ENST00000503096 1137 ntBASIC33.98■■■■□ 3.03
USP42Q9H9J4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
USP42Q9H9J4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms