Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.14■■□□□ 1.62
PTCHD1Q96NR3 RPS2P35-201ENST00000443417 897 ntBASIC25.14■■□□□ 1.62
PTCHD1Q96NR3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCHD1Q96NR3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 DUX4L28-201ENST00000623687 678 ntBASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.12■■□□□ 1.61
PTCHD1Q96NR3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD1Q96NR3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD1Q96NR3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCHD1Q96NR3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
PTCHD1Q96NR3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTCHD1Q96NR3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTCHD1Q96NR3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PTCHD1Q96NR3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTCHD1Q96NR3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.07■■□□□ 1.6
PTCHD1Q96NR3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCHD1Q96NR3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.05■■□□□ 1.6
PTCHD1Q96NR3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.05■■□□□ 1.6
PTCHD1Q96NR3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.04■■□□□ 1.6
PTCHD1Q96NR3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PTCHD1Q96NR3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PTCHD1Q96NR3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PTCHD1Q96NR3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD1Q96NR3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD1Q96NR3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCHD1Q96NR3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCHD1Q96NR3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTCHD1Q96NR3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25■■□□□ 1.59
PTCHD1Q96NR3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
PTCHD1Q96NR3 AC087741.3-201ENST00000624270 1347 ntBASIC25■■□□□ 1.59
PTCHD1Q96NR3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCHD1Q96NR3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCHD1Q96NR3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.98■■□□□ 1.59
PTCHD1Q96NR3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PTCHD1Q96NR3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD1Q96NR3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCHD1Q96NR3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.95■■□□□ 1.59
PTCHD1Q96NR3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PTCHD1Q96NR3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCHD1Q96NR3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PTCHD1Q96NR3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PTCHD1Q96NR3 AC044849.2-201ENST00000606596 710 ntBASIC24.92■■□□□ 1.58
PTCHD1Q96NR3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
PTCHD1Q96NR3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PTCHD1Q96NR3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.91■■□□□ 1.58
PTCHD1Q96NR3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
PTCHD1Q96NR3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
PTCHD1Q96NR3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PTCHD1Q96NR3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
PTCHD1Q96NR3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.88■■□□□ 1.57
PTCHD1Q96NR3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PTCHD1Q96NR3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.87■■□□□ 1.57
PTCHD1Q96NR3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
PTCHD1Q96NR3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PTCHD1Q96NR3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
PTCHD1Q96NR3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PTCHD1Q96NR3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.56
PTCHD1Q96NR3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PTCHD1Q96NR3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCHD1Q96NR3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PTCHD1Q96NR3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PTCHD1Q96NR3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms