Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CKS1BP61024 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CKS1BP61024 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS1BP61024 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CKS1BP61024 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CKS1BP61024 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CKS1BP61024 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CKS1BP61024 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CKS1BP61024 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
CKS1BP61024 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.26■□□□□ 0.51
CKS1BP61024 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CKS1BP61024 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.26■□□□□ 0.51
CKS1BP61024 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CKS1BP61024 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC18.26■□□□□ 0.51
CKS1BP61024 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CKS1BP61024 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC18.25■□□□□ 0.51
CKS1BP61024 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CKS1BP61024 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 MVK-208ENST00000539696 608 ntTSL 5 BASIC18.24■□□□□ 0.51
CKS1BP61024 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CKS1BP61024 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS1BP61024 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS1BP61024 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CKS1BP61024 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC18.23■□□□□ 0.51
CKS1BP61024 PKM-204ENST00000449901 2526 ntTSL 2 BASIC18.22■□□□□ 0.51
CKS1BP61024 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CKS1BP61024 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CKS1BP61024 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
CKS1BP61024 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CKS1BP61024 ABCB10P3-201ENST00000561950 2166 ntBASIC18.21■□□□□ 0.51
CKS1BP61024 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CKS1BP61024 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CKS1BP61024 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CKS1BP61024 ABCB10P1-201ENST00000614297 2181 ntBASIC18.2■□□□□ 0.5
CKS1BP61024 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CKS1BP61024 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CKS1BP61024 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS1BP61024 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS1BP61024 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS1BP61024 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CKS1BP61024 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CKS1BP61024 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC18.16■□□□□ 0.5
CKS1BP61024 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CKS1BP61024 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CKS1BP61024 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC18.15■□□□□ 0.5
CKS1BP61024 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS1BP61024 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS1BP61024 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS1BP61024 AC006077.2-201ENST00000623591 457 ntBASIC18.15■□□□□ 0.5
CKS1BP61024 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC18.15■□□□□ 0.5
CKS1BP61024 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS1BP61024 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS1BP61024 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS1BP61024 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS1BP61024 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CKS1BP61024 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CKS1BP61024 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CKS1BP61024 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC18.13■□□□□ 0.49
CKS1BP61024 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CKS1BP61024 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS1BP61024 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS1BP61024 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS1BP61024 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS1BP61024 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS1BP61024 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS1BP61024 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
CKS1BP61024 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS1BP61024 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS1BP61024 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CKS1BP61024 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS1BP61024 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC18.1■□□□□ 0.49
CKS1BP61024 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CKS1BP61024 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC18.09■□□□□ 0.49
CKS1BP61024 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CKS1BP61024 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CKS1BP61024 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CKS1BP61024 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CKS1BP61024 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.48
CKS1BP61024 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CKS1BP61024 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.07■□□□□ 0.48
CKS1BP61024 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CKS1BP61024 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CKS1BP61024 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CKS1BP61024 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC18.05■□□□□ 0.48
CKS1BP61024 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CKS1BP61024 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CKS1BP61024 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CKS1BP61024 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.04■□□□□ 0.48
CKS1BP61024 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.04■□□□□ 0.48
CKS1BP61024 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CKS1BP61024 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CKS1BP61024 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CKS1BP61024 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CKS1BP61024 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC18.03■□□□□ 0.48
CKS1BP61024 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms