Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.98■■■□□ 2.55
ERCC3P19447 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
ERCC3P19447 AC021231.2-201ENST00000594613 730 ntBASIC30.98■■■□□ 2.55
ERCC3P19447 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
ERCC3P19447 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
ERCC3P19447 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.97■■■□□ 2.55
ERCC3P19447 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
ERCC3P19447 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
ERCC3P19447 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.95■■■□□ 2.55
ERCC3P19447 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
ERCC3P19447 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
ERCC3P19447 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
ERCC3P19447 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.94■■■□□ 2.54
ERCC3P19447 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
ERCC3P19447 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.93■■■□□ 2.54
ERCC3P19447 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
ERCC3P19447 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
ERCC3P19447 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.93■■■□□ 2.54
ERCC3P19447 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
ERCC3P19447 MIR6090-201ENST00000622481 60 ntBASIC30.92■■■□□ 2.54
ERCC3P19447 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
ERCC3P19447 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.92■■■□□ 2.54
ERCC3P19447 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
ERCC3P19447 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ERCC3P19447 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
ERCC3P19447 AC108673.1-201ENST00000510422 1159 ntBASIC30.89■■■□□ 2.54
ERCC3P19447 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
ERCC3P19447 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
ERCC3P19447 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
ERCC3P19447 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
ERCC3P19447 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
ERCC3P19447 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
ERCC3P19447 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.86■■■□□ 2.53
ERCC3P19447 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
ERCC3P19447 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
ERCC3P19447 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.85■■■□□ 2.53
ERCC3P19447 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
ERCC3P19447 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
ERCC3P19447 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.83■■■□□ 2.53
ERCC3P19447 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
ERCC3P19447 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
ERCC3P19447 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.81■■■□□ 2.52
ERCC3P19447 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
ERCC3P19447 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.81■■■□□ 2.52
ERCC3P19447 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
ERCC3P19447 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
ERCC3P19447 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
ERCC3P19447 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
ERCC3P19447 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.8■■■□□ 2.52
ERCC3P19447 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.79■■■□□ 2.52
ERCC3P19447 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.79■■■□□ 2.52
ERCC3P19447 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
ERCC3P19447 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
ERCC3P19447 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
ERCC3P19447 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
ERCC3P19447 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.75■■■□□ 2.51
ERCC3P19447 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
ERCC3P19447 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
ERCC3P19447 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
ERCC3P19447 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.72■■■□□ 2.51
ERCC3P19447 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
ERCC3P19447 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
ERCC3P19447 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
ERCC3P19447 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
ERCC3P19447 MIR639-201ENST00000384974 98 ntBASIC30.71■■■□□ 2.51
ERCC3P19447 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.71■■■□□ 2.51
ERCC3P19447 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.71■■■□□ 2.51
ERCC3P19447 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
ERCC3P19447 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.7■■■□□ 2.51
ERCC3P19447 MIR4449-201ENST00000578365 66 ntBASIC30.7■■■□□ 2.51
ERCC3P19447 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.69■■■□□ 2.5
ERCC3P19447 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
ERCC3P19447 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
ERCC3P19447 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
ERCC3P19447 MIR3648-2-201ENST00000581792 180 ntBASIC30.66■■■□□ 2.5
ERCC3P19447 MIR3648-1-201ENST00000615959 180 ntBASIC30.66■■■□□ 2.5
ERCC3P19447 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
ERCC3P19447 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
ERCC3P19447 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.65■■■□□ 2.5
ERCC3P19447 AC016575.1-201ENST00000607026 382 ntBASIC30.64■■■□□ 2.5
ERCC3P19447 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.64■■■□□ 2.5
ERCC3P19447 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.63■■■□□ 2.49
ERCC3P19447 AC120057.4-201ENST00000624722 1615 ntBASIC30.63■■■□□ 2.49
ERCC3P19447 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
ERCC3P19447 DUX4L11-201ENST00000611504 1267 ntBASIC30.62■■■□□ 2.49
ERCC3P19447 DUX4L12-201ENST00000614593 1267 ntBASIC30.62■■■□□ 2.49
ERCC3P19447 LINC01971-201ENST00000617888 1048 ntBASIC30.62■■■□□ 2.49
ERCC3P19447 DUX4L14-201ENST00000621227 1267 ntBASIC30.62■■■□□ 2.49
ERCC3P19447 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.61■■■□□ 2.49
ERCC3P19447 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
ERCC3P19447 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.6■■■□□ 2.49
ERCC3P19447 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
ERCC3P19447 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
ERCC3P19447 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
ERCC3P19447 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.57■■■□□ 2.48
ERCC3P19447 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
ERCC3P19447 CR559946.2-201ENST00000623684 991 ntBASIC30.56■■■□□ 2.48
ERCC3P19447 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
ERCC3P19447 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
ERCC3P19447 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms