Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CBX4O00257 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CBX4O00257 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CBX4O00257 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CBX4O00257 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
CBX4O00257 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CBX4O00257 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.27■■□□□ 1.96
CBX4O00257 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC27.27■■□□□ 1.96
CBX4O00257 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC27.27■■□□□ 1.96
CBX4O00257 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CBX4O00257 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CBX4O00257 RPS2-209ENST00000529806 993 ntTSL 3 BASIC27.25■■□□□ 1.95
CBX4O00257 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CBX4O00257 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
CBX4O00257 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC27.24■■□□□ 1.95
CBX4O00257 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC27.24■■□□□ 1.95
CBX4O00257 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CBX4O00257 AC087741.3-201ENST00000624270 1347 ntBASIC27.23■■□□□ 1.95
CBX4O00257 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CBX4O00257 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
CBX4O00257 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
CBX4O00257 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.23■■□□□ 1.95
CBX4O00257 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CBX4O00257 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
CBX4O00257 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
CBX4O00257 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CBX4O00257 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CBX4O00257 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
CBX4O00257 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
CBX4O00257 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
CBX4O00257 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.2■■□□□ 1.94
CBX4O00257 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CBX4O00257 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CBX4O00257 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CBX4O00257 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CBX4O00257 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CBX4O00257 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC27.18■■□□□ 1.94
CBX4O00257 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
CBX4O00257 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC27.17■■□□□ 1.94
CBX4O00257 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC27.16■■□□□ 1.94
CBX4O00257 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CBX4O00257 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.16■■□□□ 1.94
CBX4O00257 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CBX4O00257 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
CBX4O00257 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CBX4O00257 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC27.15■■□□□ 1.94
CBX4O00257 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CBX4O00257 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CBX4O00257 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CBX4O00257 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
CBX4O00257 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC27.13■■□□□ 1.93
CBX4O00257 AC044849.2-201ENST00000606596 710 ntBASIC27.12■■□□□ 1.93
CBX4O00257 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC27.12■■□□□ 1.93
CBX4O00257 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CBX4O00257 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
CBX4O00257 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC27.11■■□□□ 1.93
CBX4O00257 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CBX4O00257 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
CBX4O00257 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC27.09■■□□□ 1.93
CBX4O00257 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
CBX4O00257 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CBX4O00257 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC27.08■■□□□ 1.93
CBX4O00257 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CBX4O00257 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CBX4O00257 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CBX4O00257 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC27.06■■□□□ 1.92
CBX4O00257 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CBX4O00257 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CBX4O00257 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CBX4O00257 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CBX4O00257 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CBX4O00257 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CBX4O00257 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.05■■□□□ 1.92
CBX4O00257 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC27.05■■□□□ 1.92
CBX4O00257 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CBX4O00257 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CBX4O00257 ABHD17AP4-201ENST00000411545 909 ntBASIC27.03■■□□□ 1.92
CBX4O00257 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92
CBX4O00257 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
CBX4O00257 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CBX4O00257 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CBX4O00257 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CBX4O00257 MIR7108-201ENST00000614319 87 ntBASIC27.02■■□□□ 1.92
CBX4O00257 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CBX4O00257 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CBX4O00257 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CBX4O00257 ST7-205ENST00000393446 2114 ntTSL 5 BASIC27.01■■□□□ 1.91
CBX4O00257 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
CBX4O00257 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CBX4O00257 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CBX4O00257 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CBX4O00257 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.97■■□□□ 1.91
CBX4O00257 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.97■■□□□ 1.91
CBX4O00257 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CBX4O00257 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CBX4O00257 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CBX4O00257 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CBX4O00257 AC108673.1-201ENST00000510422 1159 ntBASIC26.96■■□□□ 1.91
CBX4O00257 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.96■■□□□ 1.91
CBX4O00257 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms