Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 AP006261.1-201ENST00000584783 668 ntBASIC20.97■□□□□ 0.95
TRAV41A0A0B4J266 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV41A0A0B4J266 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV41A0A0B4J266 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV41A0A0B4J266 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAV41A0A0B4J266 ST7-205ENST00000393446 2114 ntTSL 5 BASIC20.96■□□□□ 0.95
TRAV41A0A0B4J266 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.95
TRAV41A0A0B4J266 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TRAV41A0A0B4J266 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV41A0A0B4J266 AC005559.1-201ENST00000589661 871 ntBASIC20.95■□□□□ 0.94
TRAV41A0A0B4J266 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV41A0A0B4J266 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV41A0A0B4J266 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV41A0A0B4J266 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV41A0A0B4J266 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
TRAV41A0A0B4J266 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV41A0A0B4J266 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 MIR3665-201ENST00000578708 105 ntBASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.92■□□□□ 0.94
TRAV41A0A0B4J266 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV41A0A0B4J266 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV41A0A0B4J266 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV41A0A0B4J266 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV41A0A0B4J266 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.9■□□□□ 0.94
TRAV41A0A0B4J266 ST7-202ENST00000323984 2142 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAV41A0A0B4J266 ST7-207ENST00000393449 2127 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAV41A0A0B4J266 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRAV41A0A0B4J266 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.89■□□□□ 0.94
TRAV41A0A0B4J266 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRAV41A0A0B4J266 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.89■□□□□ 0.93
TRAV41A0A0B4J266 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.89■□□□□ 0.93
TRAV41A0A0B4J266 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV41A0A0B4J266 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRAV41A0A0B4J266 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.88■□□□□ 0.93
TRAV41A0A0B4J266 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV41A0A0B4J266 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV41A0A0B4J266 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV41A0A0B4J266 DUX4L28-201ENST00000623687 678 ntBASIC20.87■□□□□ 0.93
TRAV41A0A0B4J266 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV41A0A0B4J266 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV41A0A0B4J266 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.87■□□□□ 0.93
TRAV41A0A0B4J266 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRAV41A0A0B4J266 AL162393.1-201ENST00000437852 946 ntBASIC20.86■□□□□ 0.93
TRAV41A0A0B4J266 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV41A0A0B4J266 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV41A0A0B4J266 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV41A0A0B4J266 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV41A0A0B4J266 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.85■□□□□ 0.93
TRAV41A0A0B4J266 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV41A0A0B4J266 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRAV41A0A0B4J266 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAV41A0A0B4J266 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV41A0A0B4J266 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV41A0A0B4J266 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV41A0A0B4J266 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV41A0A0B4J266 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV41A0A0B4J266 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
TRAV41A0A0B4J266 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV41A0A0B4J266 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.81■□□□□ 0.92
TRAV41A0A0B4J266 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV41A0A0B4J266 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TRAV41A0A0B4J266 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV41A0A0B4J266 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV41A0A0B4J266 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV41A0A0B4J266 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TRAV41A0A0B4J266 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV41A0A0B4J266 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV41A0A0B4J266 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV41A0A0B4J266 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV41A0A0B4J266 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV41A0A0B4J266 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAV41A0A0B4J266 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAV41A0A0B4J266 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV41A0A0B4J266 RPS2P35-201ENST00000443417 897 ntBASIC20.77■□□□□ 0.92
TRAV41A0A0B4J266 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV41A0A0B4J266 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV41A0A0B4J266 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV41A0A0B4J266 AC087741.3-201ENST00000624270 1347 ntBASIC20.76■□□□□ 0.91
TRAV41A0A0B4J266 AL135925.1-201ENST00000605920 1701 ntBASIC20.75■□□□□ 0.91
TRAV41A0A0B4J266 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV41A0A0B4J266 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.75■□□□□ 0.91
TRAV41A0A0B4J266 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRAV41A0A0B4J266 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.74■□□□□ 0.91
TRAV41A0A0B4J266 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV41A0A0B4J266 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.73■□□□□ 0.91
TRAV41A0A0B4J266 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.73■□□□□ 0.91
TRAV41A0A0B4J266 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRAV41A0A0B4J266 AC010864.1-201ENST00000609407 1511 ntBASIC20.73■□□□□ 0.91
TRAV41A0A0B4J266 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
TRAV41A0A0B4J266 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms