Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.45■□□□□ 0.54
MMP28Q9H239 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.45■□□□□ 0.54
MMP28Q9H239 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MMP28Q9H239 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.45■□□□□ 0.54
MMP28Q9H239 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.45■□□□□ 0.54
MMP28Q9H239 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MMP28Q9H239 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MMP28Q9H239 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.44■□□□□ 0.54
MMP28Q9H239 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 GABARAPL3-202ENST00000624044 1851 ntBASIC18.44■□□□□ 0.54
MMP28Q9H239 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.44■□□□□ 0.54
MMP28Q9H239 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.44■□□□□ 0.54
MMP28Q9H239 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
MMP28Q9H239 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.44■□□□□ 0.54
MMP28Q9H239 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MMP28Q9H239 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 MIR6724-1-201ENST00000616420 92 ntBASIC18.43■□□□□ 0.54
MMP28Q9H239 MIR6724-2-201ENST00000616483 92 ntBASIC18.43■□□□□ 0.54
MMP28Q9H239 MIR6724-4-201ENST00000617390 92 ntBASIC18.43■□□□□ 0.54
MMP28Q9H239 MIR6724-3-201ENST00000622482 92 ntBASIC18.43■□□□□ 0.54
MMP28Q9H239 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.43■□□□□ 0.54
MMP28Q9H239 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MMP28Q9H239 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
MMP28Q9H239 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.42■□□□□ 0.54
MMP28Q9H239 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
MMP28Q9H239 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
MMP28Q9H239 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.42■□□□□ 0.54
MMP28Q9H239 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
MMP28Q9H239 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.42■□□□□ 0.54
MMP28Q9H239 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
MMP28Q9H239 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
MMP28Q9H239 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MMP28Q9H239 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
MMP28Q9H239 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
MMP28Q9H239 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MMP28Q9H239 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.41■□□□□ 0.54
MMP28Q9H239 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.41■□□□□ 0.54
MMP28Q9H239 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MMP28Q9H239 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MMP28Q9H239 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MMP28Q9H239 AP005212.1-201ENST00000581547 1997 ntBASIC18.41■□□□□ 0.54
MMP28Q9H239 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms