RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 NISCHQ9Y2I1 1504 aa56.33■■■■■ 6.61
LSM4-201ENST00000252816 CCDC180Q9P1Z9 1646 aa50.13■■■■■ 5.62
LSM4-201ENST00000252816 ABCC9O60706 1549 aa49.42■■■■■ 5.5
LSM4-201ENST00000252816 RB1CC1Q8TDY2 1594 aa47.34■■■■■ 5.17
LSM4-201ENST00000252816 NACADO15069 1562 aa47.23■■■■■ 5.15
LSM4-201ENST00000252816 DCAF8L2P0C7V8 631 aa47.21■■■■■ 5.15
LSM4-201ENST00000252816 ZCCHC6Q5VYS8 1495 aaKnown RBP46.86■■■■■ 5.09
LSM4-201ENST00000252816 MYO15BQ96JP2 1530 aa46.84■■■■■ 5.09
LSM4-201ENST00000252816 DCAF1Q9Y4B6 1507 aa46.55■■■■■ 5.04
LSM4-201ENST00000252816 UNC13AQ9UPW8 1703 aa46.28■■■■■ 5
LSM4-201ENST00000252816 PABPN1Q86U42 306 aaKnown RBP eCLIP46.17■■■■■ 4.98
LSM4-201ENST00000252816 BICRAQ9NZM4 1560 aa45.99■■■■■ 4.95
LSM4-201ENST00000252816 SCRIBQ14160 1630 aa45.78■■■■■ 4.92
LSM4-201ENST00000252816 DNAJC5BQ9UF47 199 aa45.7■■■■■ 4.91
LSM4-201ENST00000252816 SHROOM4Q9ULL8 1493 aa45.38■■■■■ 4.86
LSM4-201ENST00000252816 EIF4G1Q04637 1599 aaKnown RBP44.77■■■■■ 4.76
LSM4-201ENST00000252816 CC2D2AQ9P2K1 1620 aa44.66■■■■■ 4.74
LSM4-201ENST00000252816 CECR2Q9BXF3 1484 aa44.42■■■■■ 4.7
LSM4-201ENST00000252816 SMARCA4P51532 1647 aa43.75■■■■■ 4.59
LSM4-201ENST00000252816 BAZ1AQ9NRL2 1556 aaPredicted RBP43.64■■■■■ 4.58
LSM4-201ENST00000252816 NCAPD3P42695 1498 aa43.62■■■■■ 4.57
LSM4-201ENST00000252816 ATAD2BQ9ULI0 1458 aa43.62■■■■■ 4.57
LSM4-201ENST00000252816 SMARCA2P51531 1590 aa43.5■■■■■ 4.55
LSM4-201ENST00000252816 MROH2BQ7Z745 1585 aa43.44■■■■■ 4.54
LSM4-201ENST00000252816 HMGXB3Q12766 1538 aa43.35■■■■■ 4.53
LSM4-201ENST00000252816 PEG3Q9GZU2 1588 aa43.32■■■■■ 4.52
LSM4-201ENST00000252816 BAZ1BQ9UIG0 1483 aaKnown RBP43.21■■■■■ 4.51
LSM4-201ENST00000252816 WIZO95785 1651 aa42.93■■■■■ 4.46
LSM4-201ENST00000252816 RSF1Q96T23 1441 aaPredicted RBP42.84■■■■■ 4.45
LSM4-201ENST00000252816 NESP48681 1621 aa42.71■■■■■ 4.43
LSM4-201ENST00000252816 ERCC6Q03468 1493 aa42.57■■■■■ 4.41
LSM4-201ENST00000252816 LAMC3Q9Y6N6 1575 aa42.47■■■■■ 4.39
LSM4-201ENST00000252816 TOP2AP11388 1531 aaKnown RBP42.43■■■■■ 4.38
LSM4-201ENST00000252816 CADPSQ9ULU8 1353 aa42.34■■■■■ 4.37
LSM4-201ENST00000252816 PDS5BQ9NTI5 1447 aa42.21■■■■■ 4.35
LSM4-201ENST00000252816 CUX2O14529 1486 aa42.21■■■■■ 4.35
LSM4-201ENST00000252816 KIF21AQ7Z4S6 1674 aa42.12■■■■■ 4.33
LSM4-201ENST00000252816 THOC2Q8NI27 1593 aaKnown RBP42.07■■■■■ 4.33
LSM4-201ENST00000252816 CFTRP13569 1480 aa42.03■■■■■ 4.32
LSM4-201ENST00000252816 CCDC88BA6NC98 1476 aa41.98■■■■■ 4.31
LSM4-201ENST00000252816 FANCD2Q9BXW9 1451 aa41.85■■■■■ 4.29
LSM4-201ENST00000252816 MRC2Q9UBG0 1479 aa41.81■■■■■ 4.28
LSM4-201ENST00000252816 CEP164Q9UPV0 1460 aa41.8■■■■■ 4.28
LSM4-201ENST00000252816 WDR62O43379 1518 aa41.69■■■■■ 4.26
LSM4-201ENST00000252816 PRDM2Q13029 1718 aa41.59■■■■■ 4.25
LSM4-201ENST00000252816 SUPT5HO00267 1087 aaKnown RBP41.55■■■■■ 4.24
LSM4-201ENST00000252816 URB2Q14146 1524 aaKnown RBP41.48■■■■■ 4.23
LSM4-201ENST00000252816 DNAJC5Q9H3Z4 198 aa41.31■■■■■ 4.2
LSM4-201ENST00000252816 TOPBP1Q92547 1522 aa41.15■■■■■ 4.18
LSM4-201ENST00000252816 ABCC8Q09428 1581 aa41.07■■■■■ 4.16
LSM4-201ENST00000252816 DNMBPQ6XZF7 1577 aa41.05■■■■■ 4.16
LSM4-201ENST00000252816 IFT140Q96RY7 1462 aa40.94■■■■■ 4.14
LSM4-201ENST00000252816 ZNF608Q9ULD9 1512 aaPredicted RBP40.84■■■■■ 4.13
LSM4-201ENST00000252816 POLA1P09884 1462 aaPredicted RBP40.79■■■■■ 4.12
LSM4-201ENST00000252816 CUX1P39880 1505 aa40.77■■■■■ 4.12
LSM4-201ENST00000252816 TARBP1Q13395 1621 aaKnown RBP40.72■■■■■ 4.11
LSM4-201ENST00000252816 RAD54L2Q9Y4B4 1467 aa40.65■■■■■ 4.1
LSM4-201ENST00000252816 FGD5Q6ZNL6 1462 aa40.64■■■■■ 4.1
LSM4-201ENST00000252816 SOGA1O94964 1423 aa40.61■■■■■ 4.09
LSM4-201ENST00000252816 EIF4G3O43432 1585 aaKnown RBP40.61■■■■■ 4.09
LSM4-201ENST00000252816 AQRO60306 1485 aaKnown RBP eCLIP40.57■■■■■ 4.085e-8■■□□□ 13.7
LSM4-201ENST00000252816 TDRD9Q8NDG6 1382 aaKnown RBP40.45■■■■■ 4.07
LSM4-201ENST00000252816 OSCARQ8IYS5 282 aa40.44■■■■■ 4.06
LSM4-201ENST00000252816 WRNQ14191 1432 aaPredicted RBP eCLIP40.37■■■■■ 4.05
LSM4-201ENST00000252816 WDR97A6NE52 1622 aa40.31■■■■■ 4.04
LSM4-201ENST00000252816 SYNJ1O43426 1573 aa40.3■■■■■ 4.04
LSM4-201ENST00000252816 TOP2BQ02880 1626 aa40.29■■■■■ 4.04
LSM4-201ENST00000252816 BIVM-ERCC5R4GMW8 1640 aa40.27■■■■■ 4.04
LSM4-201ENST00000252816 ABCA10Q8WWZ4 1543 aa40.23■■■■■ 4.03
LSM4-201ENST00000252816 GRIN2BQ13224 1484 aa40.16■■■■■ 4.02
LSM4-201ENST00000252816 SNAPC4Q5SXM2 1469 aa40.16■■■■■ 4.02
LSM4-201ENST00000252816 CHD1O14646 1710 aa40.13■■■■■ 4.02
LSM4-201ENST00000252816 GAPVD1Q14C86 1478 aa40.13■■■■■ 4.02
LSM4-201ENST00000252816 FBLN2P98095 1184 aa40.12■■■■■ 4.01
LSM4-201ENST00000252816 ABCA5Q8WWZ7 1642 aa40.09■■■■■ 4.01
LSM4-201ENST00000252816 MAGI1Q96QZ7 1491 aaPredicted RBP40.07■■■■■ 4
LSM4-201ENST00000252816 PBRM1Q86U86 1689 aa40.02■■■■■ 4
LSM4-201ENST00000252816 CHMP7Q8WUX9 453 aaPredicted RBP39.95■■■■□ 3.99
LSM4-201ENST00000252816 SYNJ2O15056 1496 aa39.93■■■■□ 3.98
LSM4-201ENST00000252816 TRIM41Q8WV44 630 aa39.84■■■■□ 3.97
LSM4-201ENST00000252816 RIMBP3CA6NJZ7 1639 aa39.82■■■■□ 3.96
LSM4-201ENST00000252816 RIMBP3BA6NNM3 1639 aa39.82■■■■□ 3.96
LSM4-201ENST00000252816 RIMBP3Q9UFD9 1639 aa39.82■■■■□ 3.96
LSM4-201ENST00000252816 ARHGEF11O15085 1522 aa39.8■■■■□ 3.96
LSM4-201ENST00000252816 CLASP1Q7Z460 1538 aa39.73■■■■□ 3.95
LSM4-201ENST00000252816 ADAMTS12P58397 1594 aa39.72■■■■□ 3.95
LSM4-201ENST00000252816 ERICH3Q5RHP9 1530 aa39.72■■■■□ 3.95
LSM4-201ENST00000252816 FHAD1B1AJZ9 1412 aa39.65■■■■□ 3.94
LSM4-201ENST00000252816 GRIN2AQ12879 1464 aa39.65■■■■□ 3.94
LSM4-201ENST00000252816 KIF27Q86VH2 1401 aa39.53■■■■□ 3.92
LSM4-201ENST00000252816 NUP160Q12769 1436 aa39.5■■■■□ 3.91
LSM4-201ENST00000252816 ARAP1Q96P48 1450 aa39.49■■■■□ 3.91
LSM4-201ENST00000252816 CEP170Q5SW79 1584 aa39.47■■■■□ 3.91
LSM4-201ENST00000252816 CYB5RLQ6IPT4 315 aa39.47■■■■□ 3.91
LSM4-201ENST00000252816 IGF1RP08069 1367 aa39.46■■■■□ 3.91
LSM4-201ENST00000252816 CUL7Q14999 1698 aa39.27■■■■□ 3.88
LSM4-201ENST00000252816 ERCC6L2Q5T890 1561 aa39.21■■■■□ 3.87
LSM4-201ENST00000252816 SHROOM2Q13796 1616 aa39.2■■■■□ 3.87
LSM4-201ENST00000252816 CARMIL1Q5VZK9 1371 aa39.2■■■■□ 3.87
LSM4-201ENST00000252816 RUSC2Q8N2Y8 1516 aa39.17■■■■□ 3.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms