RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 NISCHQ9Y2I1 1504 aa45.44■■■■■ 4.86
SMPDL3A-203ENST00000539041 CCDC180Q9P1Z9 1646 aa39.45■■■■□ 3.91
SMPDL3A-203ENST00000539041 ZCCHC6Q5VYS8 1495 aaKnown RBP38.3■■■■□ 3.72
SMPDL3A-203ENST00000539041 DCAF1Q9Y4B6 1507 aa37.55■■■■□ 3.6
SMPDL3A-203ENST00000539041 SHROOM4Q9ULL8 1493 aa37.5■■■■□ 3.59
SMPDL3A-203ENST00000539041 DCAF8L2P0C7V8 631 aa37.29■■■■□ 3.56
SMPDL3A-203ENST00000539041 MYO15BQ96JP2 1530 aa36.86■■■■□ 3.49
SMPDL3A-203ENST00000539041 ABCC9O60706 1549 aa36.7■■■■□ 3.47
SMPDL3A-203ENST00000539041 NACADO15069 1562 aa36.51■■■■□ 3.44
SMPDL3A-203ENST00000539041 SCRIBQ14160 1630 aa36.36■■■■□ 3.41
SMPDL3A-203ENST00000539041 SUPT5HO00267 1087 aaKnown RBP36.33■■■■□ 3.41
SMPDL3A-203ENST00000539041 RB1CC1Q8TDY2 1594 aa36.09■■■■□ 3.37
SMPDL3A-203ENST00000539041 UNC13AQ9UPW8 1703 aa35.6■■■■□ 3.29
SMPDL3A-203ENST00000539041 RSF1Q96T23 1441 aaPredicted RBP35.44■■■■□ 3.26
SMPDL3A-203ENST00000539041 CECR2Q9BXF3 1484 aa35.26■■■■□ 3.24
SMPDL3A-203ENST00000539041 MROH2BQ7Z745 1585 aa35.15■■■■□ 3.22
SMPDL3A-203ENST00000539041 CHIC1Q5VXU3 224 aa35.08■■■■□ 3.21
SMPDL3A-203ENST00000539041 BAZ1AQ9NRL2 1556 aaPredicted RBP35.05■■■■□ 3.2
SMPDL3A-203ENST00000539041 BICRAQ9NZM4 1560 aa35.02■■■■□ 3.2
SMPDL3A-203ENST00000539041 WIZO95785 1651 aa34.99■■■■□ 3.19
SMPDL3A-203ENST00000539041 SMARCA4P51532 1647 aa34.88■■■■□ 3.17
SMPDL3A-203ENST00000539041 PABPN1Q86U42 306 aaKnown RBP eCLIP34.67■■■■□ 3.14
SMPDL3A-203ENST00000539041 TOP2AP11388 1531 aaKnown RBP34.56■■■■□ 3.12
SMPDL3A-203ENST00000539041 PEG3Q9GZU2 1588 aa34.37■■■■□ 3.09
SMPDL3A-203ENST00000539041 SMARCA2P51531 1590 aa34.28■■■■□ 3.08
SMPDL3A-203ENST00000539041 EIF4G1Q04637 1599 aaKnown RBP34.28■■■■□ 3.08
SMPDL3A-203ENST00000539041 CCDC88BA6NC98 1476 aa34.18■■■■□ 3.06
SMPDL3A-203ENST00000539041 TRIM41Q8WV44 630 aa34.09■■■■□ 3.05
SMPDL3A-203ENST00000539041 ATAD2BQ9ULI0 1458 aa34.06■■■■□ 3.04
SMPDL3A-203ENST00000539041 BAZ1BQ9UIG0 1483 aaKnown RBP33.93■■■■□ 3.02
SMPDL3A-203ENST00000539041 LOC105371045A0A1W2PR82 267 aa33.77■■■■□ 3
SMPDL3A-203ENST00000539041 ABCC8Q09428 1581 aa33.73■■■□□ 2.99
SMPDL3A-203ENST00000539041 HMGXB3Q12766 1538 aa33.72■■■□□ 2.99
SMPDL3A-203ENST00000539041 NCAPD3P42695 1498 aa33.63■■■□□ 2.97
SMPDL3A-203ENST00000539041 FAM9AQ8IZU1 332 aaPredicted RBP33.52■■■□□ 2.96
SMPDL3A-203ENST00000539041 WRNQ14191 1432 aaPredicted RBP eCLIP33.36■■■□□ 2.93
SMPDL3A-203ENST00000539041 SYNJ1O43426 1573 aa33.28■■■□□ 2.92
SMPDL3A-203ENST00000539041 CC2D2AQ9P2K1 1620 aa33.27■■■□□ 2.92
SMPDL3A-203ENST00000539041 PRDM2Q13029 1718 aa33.22■■■□□ 2.91
SMPDL3A-203ENST00000539041 EEA1Q15075 1411 aa33.18■■■□□ 2.9
SMPDL3A-203ENST00000539041 SOGA1O94964 1423 aa33.14■■■□□ 2.9
SMPDL3A-203ENST00000539041 BIVM-ERCC5R4GMW8 1640 aa33.1■■■□□ 2.89
SMPDL3A-203ENST00000539041 TOP2BQ02880 1626 aa33.09■■■□□ 2.89
SMPDL3A-203ENST00000539041 CFTRP13569 1480 aa33.07■■■□□ 2.88
SMPDL3A-203ENST00000539041 EHMT2Q96KQ7 1210 aa33.06■■■□□ 2.88
SMPDL3A-203ENST00000539041 RUSC2Q8N2Y8 1516 aa33.02■■■□□ 2.88
SMPDL3A-203ENST00000539041 CSRNP3Q8WYN3 585 aa32.91■■■□□ 2.86
SMPDL3A-203ENST00000539041 PCGF6Q9BYE7 350 aa32.86■■■□□ 2.85
SMPDL3A-203ENST00000539041 CUX1P39880 1505 aa32.84■■■□□ 2.85
SMPDL3A-203ENST00000539041 KIF21BO75037 1637 aa32.82■■■□□ 2.84
SMPDL3A-203ENST00000539041 CADPSQ9ULU8 1353 aa32.81■■■□□ 2.84
SMPDL3A-203ENST00000539041 GOLGA3Q08378 1498 aa32.79■■■□□ 2.84
SMPDL3A-203ENST00000539041 TNIKQ9UKE5 1360 aa32.76■■■□□ 2.83
SMPDL3A-203ENST00000539041 CEP164Q9UPV0 1460 aa32.72■■■□□ 2.83
SMPDL3A-203ENST00000539041 TRIM26Q12899 539 aaPredicted RBP32.7■■■□□ 2.82
SMPDL3A-203ENST00000539041 CEP162Q5TB80 1403 aa32.66■■■□□ 2.82
SMPDL3A-203ENST00000539041 UBTFP17480 764 aaKnown RBP32.56■■■□□ 2.8
SMPDL3A-203ENST00000539041 FANCD2Q9BXW9 1451 aa32.5■■■□□ 2.79
SMPDL3A-203ENST00000539041 LAMC3Q9Y6N6 1575 aa32.49■■■□□ 2.79
SMPDL3A-203ENST00000539041 RAPGEF2Q9Y4G8 1499 aa32.45■■■□□ 2.79
SMPDL3A-203ENST00000539041 ERICH3Q5RHP9 1530 aa32.45■■■□□ 2.78
SMPDL3A-203ENST00000539041 KIF27Q86VH2 1401 aa32.44■■■□□ 2.78
SMPDL3A-203ENST00000539041 NESP48681 1621 aa32.42■■■□□ 2.78
SMPDL3A-203ENST00000539041 HRCP23327 699 aa32.4■■■□□ 2.78
SMPDL3A-203ENST00000539041 PRXQ9BXM0 1461 aa32.38■■■□□ 2.77
SMPDL3A-203ENST00000539041 DNMBPQ6XZF7 1577 aa32.38■■■□□ 2.77
SMPDL3A-203ENST00000539041 FGD5Q6ZNL6 1462 aa32.37■■■□□ 2.77
SMPDL3A-203ENST00000539041 CLIP1P30622 1438 aa32.26■■■□□ 2.75
SMPDL3A-203ENST00000539041 CUX2O14529 1486 aa32.26■■■□□ 2.75
SMPDL3A-203ENST00000539041 TOPBP1Q92547 1522 aa32.24■■■□□ 2.75
SMPDL3A-203ENST00000539041 KIF21AQ7Z4S6 1674 aa32.17■■■□□ 2.74
SMPDL3A-203ENST00000539041 PPARGC1BQ86YN6 1023 aaKnown RBP32.16■■■□□ 2.74
SMPDL3A-203ENST00000539041 DNAJC5BQ9UF47 199 aa32.14■■■□□ 2.74
SMPDL3A-203ENST00000539041 PDS5BQ9NTI5 1447 aa32.13■■■□□ 2.73
SMPDL3A-203ENST00000539041 POLA1P09884 1462 aaPredicted RBP32.11■■■□□ 2.73
SMPDL3A-203ENST00000539041 URB2Q14146 1524 aaKnown RBP32.09■■■□□ 2.73
SMPDL3A-203ENST00000539041 ABCA10Q8WWZ4 1543 aa32.08■■■□□ 2.73
SMPDL3A-203ENST00000539041 WDR97A6NE52 1622 aa32.07■■■□□ 2.73
SMPDL3A-203ENST00000539041 IGF1RP08069 1367 aa32.06■■■□□ 2.72
SMPDL3A-203ENST00000539041 VPS8Q8N3P4 1428 aa32.06■■■□□ 2.72
SMPDL3A-203ENST00000539041 RAD54L2Q9Y4B4 1467 aa32.03■■■□□ 2.72
SMPDL3A-203ENST00000539041 CARMIL1Q5VZK9 1371 aa31.94■■■□□ 2.7
SMPDL3A-203ENST00000539041 CUL7Q14999 1698 aa31.92■■■□□ 2.7
SMPDL3A-203ENST00000539041 ARAP1Q96P48 1450 aa31.91■■■□□ 2.7
SMPDL3A-203ENST00000539041 RANGAP1P46060 587 aaPredicted RBP31.89■■■□□ 2.69
SMPDL3A-203ENST00000539041 ABCA5Q8WWZ7 1642 aa31.85■■■□□ 2.69
SMPDL3A-203ENST00000539041 TTBK1Q5TCY1 1321 aaPredicted RBP31.81■■■□□ 2.68
SMPDL3A-203ENST00000539041 ARHGAP35Q9NRY4 1499 aa31.78■■■□□ 2.68
SMPDL3A-203ENST00000539041 TARBP1Q13395 1621 aaKnown RBP31.76■■■□□ 2.68
SMPDL3A-203ENST00000539041 CTTNBP2Q8WZ74 1663 aa31.75■■■□□ 2.67
SMPDL3A-203ENST00000539041 MRC2Q9UBG0 1479 aa31.73■■■□□ 2.67
SMPDL3A-203ENST00000539041 APLP2Q06481 763 aa31.73■■■□□ 2.67
SMPDL3A-203ENST00000539041 ZEB1P37275 1124 aaPredicted RBP31.69■■■□□ 2.66
SMPDL3A-203ENST00000539041 GAPVD1Q14C86 1478 aa31.67■■■□□ 2.66
SMPDL3A-203ENST00000539041 PBRM1Q86U86 1689 aa31.64■■■□□ 2.65
SMPDL3A-203ENST00000539041 TDRD9Q8NDG6 1382 aaKnown RBP31.61■■■□□ 2.65
SMPDL3A-203ENST00000539041 WDR62O43379 1518 aa31.57■■■□□ 2.64
SMPDL3A-203ENST00000539041 EFCAB5A4FU69 1503 aa31.52■■■□□ 2.64
SMPDL3A-203ENST00000539041 IFT140Q96RY7 1462 aa31.42■■■□□ 2.62
SMPDL3A-203ENST00000539041 MAP3K1Q13233 1512 aa31.41■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms