RNA–Protein interactions for RNA: ENST00000377877.4

RNF38-205, Transcript of ring finger protein 38, humanhuman

TSL 2 BASIC

Gene RNF38, Length 1,974 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38-205ENST00000377877 NISCHQ9Y2I1 1504 aa48.51■■■■■ 5.36
RNF38-205ENST00000377877 CCDC180Q9P1Z9 1646 aa42.37■■■■■ 4.37
RNF38-205ENST00000377877 ZCCHC6Q5VYS8 1495 aaKnown RBP40.64■■■■■ 4.1
RNF38-205ENST00000377877 ABCC9O60706 1549 aa40.56■■■■■ 4.08
RNF38-205ENST00000377877 DCAF8L2P0C7V8 631 aa40.34■■■■■ 4.05
RNF38-205ENST00000377877 DCAF1Q9Y4B6 1507 aa40.03■■■■■ 4
RNF38-205ENST00000377877 MYO15BQ96JP2 1530 aa39.69■■■■□ 3.94
RNF38-205ENST00000377877 NACADO15069 1562 aa39.59■■■■□ 3.93
RNF38-205ENST00000377877 SHROOM4Q9ULL8 1493 aa39.43■■■■□ 3.9
RNF38-205ENST00000377877 RB1CC1Q8TDY2 1594 aa39.34■■■■□ 3.89
RNF38-205ENST00000377877 SCRIBQ14160 1630 aa39.02■■■■□ 3.84
RNF38-205ENST00000377877 UNC13AQ9UPW8 1703 aa38.61■■■■□ 3.77
RNF38-205ENST00000377877 PABPN1Q86U42 306 aaKnown RBP eCLIP38.26■■■■□ 3.72
RNF38-205ENST00000377877 BICRAQ9NZM4 1560 aa38.25■■■■□ 3.71
RNF38-205ENST00000377877 CECR2Q9BXF3 1484 aa37.81■■■■□ 3.64
RNF38-205ENST00000377877 SUPT5HO00267 1087 aaKnown RBP37.77■■■■□ 3.64
RNF38-205ENST00000377877 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
RNF38-205ENST00000377877 MROH2BQ7Z745 1585 aa37.51■■■■□ 3.6
RNF38-205ENST00000377877 BAZ1AQ9NRL2 1556 aaPredicted RBP37.43■■■■□ 3.58
RNF38-205ENST00000377877 SMARCA4P51532 1647 aa37.35■■■■□ 3.57
RNF38-205ENST00000377877 WIZO95785 1651 aa37.18■■■■□ 3.54
RNF38-205ENST00000377877 EIF4G1Q04637 1599 aaKnown RBP37.09■■■■□ 3.53
RNF38-205ENST00000377877 PEG3Q9GZU2 1588 aa36.88■■■■□ 3.49
RNF38-205ENST00000377877 ATAD2BQ9ULI0 1458 aa36.86■■■■□ 3.49
RNF38-205ENST00000377877 SMARCA2P51531 1590 aa36.76■■■■□ 3.48
RNF38-205ENST00000377877 TOP2AP11388 1531 aaKnown RBP36.7■■■■□ 3.47
RNF38-205ENST00000377877 CC2D2AQ9P2K1 1620 aa36.66■■■■□ 3.46
RNF38-205ENST00000377877 NCAPD3P42695 1498 aa36.6■■■■□ 3.45
RNF38-205ENST00000377877 BAZ1BQ9UIG0 1483 aaKnown RBP36.6■■■■□ 3.45
RNF38-205ENST00000377877 HMGXB3Q12766 1538 aa36.44■■■■□ 3.42
RNF38-205ENST00000377877 CCDC88BA6NC98 1476 aa36.41■■■■□ 3.42
RNF38-205ENST00000377877 DNAJC5BQ9UF47 199 aa36.27■■■■□ 3.4
RNF38-205ENST00000377877 CHIC1Q5VXU3 224 aa35.95■■■■□ 3.34
RNF38-205ENST00000377877 CFTRP13569 1480 aa35.68■■■■□ 3.3
RNF38-205ENST00000377877 CADPSQ9ULU8 1353 aa35.65■■■■□ 3.3
RNF38-205ENST00000377877 ABCC8Q09428 1581 aa35.53■■■■□ 3.28
RNF38-205ENST00000377877 NESP48681 1621 aa35.52■■■■□ 3.28
RNF38-205ENST00000377877 TRIM41Q8WV44 630 aa35.48■■■■□ 3.27
RNF38-205ENST00000377877 PRDM2Q13029 1718 aa35.38■■■■□ 3.25
RNF38-205ENST00000377877 LAMC3Q9Y6N6 1575 aa35.36■■■■□ 3.25
RNF38-205ENST00000377877 WRNQ14191 1432 aaPredicted RBP eCLIP35.3■■■■□ 3.24
RNF38-205ENST00000377877 FANCD2Q9BXW9 1451 aa35.24■■■■□ 3.23
RNF38-205ENST00000377877 SYNJ1O43426 1573 aa35.18■■■■□ 3.22
RNF38-205ENST00000377877 PDS5BQ9NTI5 1447 aa35.13■■■■□ 3.21
RNF38-205ENST00000377877 CUX1P39880 1505 aa35.08■■■■□ 3.21
RNF38-205ENST00000377877 TOP2BQ02880 1626 aa35.03■■■■□ 3.2
RNF38-205ENST00000377877 CEP164Q9UPV0 1460 aa35.02■■■■□ 3.2
RNF38-205ENST00000377877 KIF21AQ7Z4S6 1674 aa35.02■■■■□ 3.2
RNF38-205ENST00000377877 BIVM-ERCC5R4GMW8 1640 aa34.98■■■■□ 3.19
RNF38-205ENST00000377877 FAM9AQ8IZU1 332 aaPredicted RBP34.9■■■■□ 3.18
RNF38-205ENST00000377877 URB2Q14146 1524 aaKnown RBP34.85■■■■□ 3.17
RNF38-205ENST00000377877 TOPBP1Q92547 1522 aa34.82■■■■□ 3.17
RNF38-205ENST00000377877 SOGA1O94964 1423 aa34.82■■■■□ 3.16
RNF38-205ENST00000377877 DNMBPQ6XZF7 1577 aa34.82■■■■□ 3.16
RNF38-205ENST00000377877 ERCC6Q03468 1493 aa34.75■■■■□ 3.15
RNF38-205ENST00000377877 RUSC2Q8N2Y8 1516 aa34.75■■■■□ 3.15
RNF38-205ENST00000377877 FGD5Q6ZNL6 1462 aa34.74■■■■□ 3.15
RNF38-205ENST00000377877 MRC2Q9UBG0 1479 aa34.69■■■■□ 3.14
RNF38-205ENST00000377877 LOC105371045A0A1W2PR82 267 aa34.63■■■■□ 3.14
RNF38-205ENST00000377877 POLA1P09884 1462 aaPredicted RBP34.63■■■■□ 3.13
RNF38-205ENST00000377877 RAD54L2Q9Y4B4 1467 aa34.58■■■■□ 3.13
RNF38-205ENST00000377877 CSRNP3Q8WYN3 585 aa34.52■■■■□ 3.12
RNF38-205ENST00000377877 WDR62O43379 1518 aa34.52■■■■□ 3.12
RNF38-205ENST00000377877 EEA1Q15075 1411 aa34.51■■■■□ 3.12
RNF38-205ENST00000377877 THOC2Q8NI27 1593 aaKnown RBP34.51■■■■□ 3.11
RNF38-205ENST00000377877 EHMT2Q96KQ7 1210 aa34.47■■■■□ 3.11
RNF38-205ENST00000377877 CUX2O14529 1486 aa34.45■■■■□ 3.11
RNF38-205ENST00000377877 KIF27Q86VH2 1401 aa34.42■■■■□ 3.1
RNF38-205ENST00000377877 ABCA10Q8WWZ4 1543 aa34.4■■■■□ 3.1
RNF38-205ENST00000377877 TARBP1Q13395 1621 aaKnown RBP34.33■■■■□ 3.09
RNF38-205ENST00000377877 WDR97A6NE52 1622 aa34.29■■■■□ 3.08
RNF38-205ENST00000377877 TDRD9Q8NDG6 1382 aaKnown RBP34.29■■■■□ 3.08
RNF38-205ENST00000377877 IGF1RP08069 1367 aa34.25■■■■□ 3.07
RNF38-205ENST00000377877 IFT140Q96RY7 1462 aa34.21■■■■□ 3.07
RNF38-205ENST00000377877 ABCA5Q8WWZ7 1642 aa34.13■■■■□ 3.05
RNF38-205ENST00000377877 ZNF608Q9ULD9 1512 aaPredicted RBP34.13■■■■□ 3.05
RNF38-205ENST00000377877 AQRO60306 1485 aaKnown RBP eCLIP34.12■■■■□ 3.05
RNF38-205ENST00000377877 GAPVD1Q14C86 1478 aa34.12■■■■□ 3.05
RNF38-205ENST00000377877 PRXQ9BXM0 1461 aa34.12■■■■□ 3.05
RNF38-205ENST00000377877 KIF21BO75037 1637 aa34.11■■■■□ 3.05
RNF38-205ENST00000377877 RAPGEF2Q9Y4G8 1499 aa34.09■■■■□ 3.05
RNF38-205ENST00000377877 GOLGA3Q08378 1498 aa34.06■■■■□ 3.04
RNF38-205ENST00000377877 UBTFP17480 764 aaKnown RBP34.05■■■■□ 3.04
RNF38-205ENST00000377877 CARMIL1Q5VZK9 1371 aa34.03■■■■□ 3.04
RNF38-205ENST00000377877 ERICH3Q5RHP9 1530 aa33.96■■■■□ 3.03
RNF38-205ENST00000377877 TNIKQ9UKE5 1360 aa33.93■■■■□ 3.02
RNF38-205ENST00000377877 EIF4G3O43432 1585 aaKnown RBP33.91■■■■□ 3.02
RNF38-205ENST00000377877 PBRM1Q86U86 1689 aa33.91■■■■□ 3.02
RNF38-205ENST00000377877 GRIN2BQ13224 1484 aa33.89■■■■□ 3.02
RNF38-205ENST00000377877 CUL7Q14999 1698 aa33.86■■■■□ 3.01
RNF38-205ENST00000377877 SNAPC4Q5SXM2 1469 aa33.73■■■□□ 2.99
RNF38-205ENST00000377877 FHAD1B1AJZ9 1412 aa33.73■■■□□ 2.99
RNF38-205ENST00000377877 CEP162Q5TB80 1403 aa33.72■■■□□ 2.99
RNF38-205ENST00000377877 ADAMTS12P58397 1594 aa33.7■■■□□ 2.99
RNF38-205ENST00000377877 RANGAP1P46060 587 aaPredicted RBP33.68■■■□□ 2.98
RNF38-205ENST00000377877 MAGI1Q96QZ7 1491 aaPredicted RBP33.62■■■□□ 2.97
RNF38-205ENST00000377877 CLIP1P30622 1438 aa33.55■■■□□ 2.96
RNF38-205ENST00000377877 CHMP7Q8WUX9 453 aaPredicted RBP33.53■■■□□ 2.96
RNF38-205ENST00000377877 FBLN2P98095 1184 aa33.52■■■□□ 2.96
RNF38-205ENST00000377877 SYNJ2O15056 1496 aa33.52■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 176 ms