RNA–Protein interactions for RNA: ENST00000354547.7

COL13A1-201, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 3,027 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-201ENST00000354547 NISCHQ9Y2I1 1504 aa40.2■■■■■ 4.03
COL13A1-201ENST00000354547 SHROOM4Q9ULL8 1493 aa34.82■■■■□ 3.17
COL13A1-201ENST00000354547 SUPT5HO00267 1087 aaKnown RBP34.18■■■■□ 3.06
COL13A1-201ENST00000354547 DCAF8L2P0C7V8 631 aa34.01■■■■□ 3.03
COL13A1-201ENST00000354547 ZCCHC6Q5VYS8 1495 aaKnown RBP33.95■■■■□ 3.03
COL13A1-201ENST00000354547 CCDC180Q9P1Z9 1646 aa33.93■■■■□ 3.02
COL13A1-201ENST00000354547 CHIC1Q5VXU3 224 aa32.99■■■□□ 2.87
COL13A1-201ENST00000354547 MYO15BQ96JP2 1530 aa32.83■■■□□ 2.85
COL13A1-201ENST00000354547 DCAF1Q9Y4B6 1507 aa32.74■■■□□ 2.83
COL13A1-201ENST00000354547 LOC105371045A0A1W2PR82 267 aa32.23■■■□□ 2.75
COL13A1-201ENST00000354547 SCRIBQ14160 1630 aa32.2■■■□□ 2.74
COL13A1-201ENST00000354547 PCGF6Q9BYE7 350 aa32.2■■■□□ 2.74
COL13A1-201ENST00000354547 ABCC9O60706 1549 aa32.01■■■□□ 2.72
COL13A1-201ENST00000354547 HRCP23327 699 aa31.99■■■□□ 2.71
COL13A1-201ENST00000354547 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
COL13A1-201ENST00000354547 TRIM41Q8WV44 630 aa31.69■■■□□ 2.66
COL13A1-201ENST00000354547 FAM9AQ8IZU1 332 aaPredicted RBP31.67■■■□□ 2.66
COL13A1-201ENST00000354547 RB1CC1Q8TDY2 1594 aa31.6■■■□□ 2.65
COL13A1-201ENST00000354547 EHMT2Q96KQ7 1210 aa31.6■■■□□ 2.65
COL13A1-201ENST00000354547 PPARGC1BQ86YN6 1023 aaKnown RBP31.59■■■□□ 2.65
COL13A1-201ENST00000354547 CECR2Q9BXF3 1484 aa31.54■■■□□ 2.64
COL13A1-201ENST00000354547 NACADO15069 1562 aa31.48■■■□□ 2.63
COL13A1-201ENST00000354547 MROH2BQ7Z745 1585 aa31.36■■■□□ 2.61
COL13A1-201ENST00000354547 TRIM26Q12899 539 aaPredicted RBP31.36■■■□□ 2.61
COL13A1-201ENST00000354547 WIZO95785 1651 aa31.2■■■□□ 2.58
COL13A1-201ENST00000354547 BAZ1AQ9NRL2 1556 aaPredicted RBP30.84■■■□□ 2.53
COL13A1-201ENST00000354547 PABPN1Q86U42 306 aaKnown RBP eCLIP30.73■■■□□ 2.51
COL13A1-201ENST00000354547 ABCC8Q09428 1581 aa30.61■■■□□ 2.49
COL13A1-201ENST00000354547 SMARCA4P51532 1647 aa30.59■■■□□ 2.49
COL13A1-201ENST00000354547 CCDC88BA6NC98 1476 aa30.59■■■□□ 2.49
COL13A1-201ENST00000354547 ZEB1P37275 1124 aaPredicted RBP30.57■■■□□ 2.49
COL13A1-201ENST00000354547 TOP2AP11388 1531 aaKnown RBP30.56■■■□□ 2.48
COL13A1-201ENST00000354547 UNC13AQ9UPW8 1703 aa30.55■■■□□ 2.48
COL13A1-201ENST00000354547 TTBK1Q5TCY1 1321 aaPredicted RBP30.54■■■□□ 2.48
COL13A1-201ENST00000354547 EIF4G1Q04637 1599 aaKnown RBP30.53■■■□□ 2.48
COL13A1-201ENST00000354547 SMARCA2P51531 1590 aa30.44■■■□□ 2.46
COL13A1-201ENST00000354547 SOGA1O94964 1423 aa30.35■■■□□ 2.45
COL13A1-201ENST00000354547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.33■■■□□ 2.45
COL13A1-201ENST00000354547 UBTFP17480 764 aaKnown RBP30.27■■■□□ 2.44
COL13A1-201ENST00000354547 RUSC2Q8N2Y8 1516 aa30.21■■■□□ 2.43
COL13A1-201ENST00000354547 CCER1Q8TC90 406 aaPredicted RBP30.21■■■□□ 2.43
COL13A1-201ENST00000354547 BICRAQ9NZM4 1560 aa30.2■■■□□ 2.43
COL13A1-201ENST00000354547 CSRNP3Q8WYN3 585 aa30.19■■■□□ 2.42
COL13A1-201ENST00000354547 CEP162Q5TB80 1403 aa30.16■■■□□ 2.42
COL13A1-201ENST00000354547 TNIKQ9UKE5 1360 aa30.02■■■□□ 2.4
COL13A1-201ENST00000354547 WRNQ14191 1432 aaPredicted RBP eCLIP30.02■■■□□ 2.4
COL13A1-201ENST00000354547 RANGAP1P46060 587 aaPredicted RBP29.93■■■□□ 2.38
COL13A1-201ENST00000354547 EEA1Q15075 1411 aa29.92■■■□□ 2.38
COL13A1-201ENST00000354547 ATAD2BQ9ULI0 1458 aa29.88■■■□□ 2.37
COL13A1-201ENST00000354547 GOLGA3Q08378 1498 aa29.85■■■□□ 2.37
COL13A1-201ENST00000354547 BAZ1BQ9UIG0 1483 aaKnown RBP29.85■■■□□ 2.37
COL13A1-201ENST00000354547 PEG3Q9GZU2 1588 aa29.82■■■□□ 2.36
COL13A1-201ENST00000354547 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
COL13A1-201ENST00000354547 HNRNPUL2Q1KMD3 747 aaKnown RBP29.67■■■□□ 2.34
COL13A1-201ENST00000354547 CEP164Q9UPV0 1460 aa29.66■■■□□ 2.34
COL13A1-201ENST00000354547 CLIP1P30622 1438 aa29.62■■■□□ 2.33
COL13A1-201ENST00000354547 SCAF1Q9H7N4 1312 aaKnown RBP29.56■■■□□ 2.32
COL13A1-201ENST00000354547 RAPGEF2Q9Y4G8 1499 aa29.56■■■□□ 2.32
COL13A1-201ENST00000354547 APLP2Q06481 763 aa29.55■■■□□ 2.32
COL13A1-201ENST00000354547 DIEXFQ68CQ4 756 aaKnown RBP29.55■■■□□ 2.32
COL13A1-201ENST00000354547 KIF21BO75037 1637 aa29.49■■■□□ 2.31
COL13A1-201ENST00000354547 VPS8Q8N3P4 1428 aa29.4■■■□□ 2.3
COL13A1-201ENST00000354547 TOP2BQ02880 1626 aa29.34■■■□□ 2.29
COL13A1-201ENST00000354547 NEUROD1Q13562 356 aa29.29■■■□□ 2.28
COL13A1-201ENST00000354547 ZNF316A6NFI3 1004 aaPredicted RBP29.26■■■□□ 2.27
COL13A1-201ENST00000354547 ACIN1Q9UKV3 1341 aaKnown RBP29.23■■■□□ 2.27
COL13A1-201ENST00000354547 NCAPD3P42695 1498 aa29.21■■■□□ 2.27
COL13A1-201ENST00000354547 CUX1P39880 1505 aa29.16■■■□□ 2.26
COL13A1-201ENST00000354547 BIVM-ERCC5R4GMW8 1640 aa29.16■■■□□ 2.26
COL13A1-201ENST00000354547 KANK4Q5T7N3 995 aaPredicted RBP29.13■■■□□ 2.25
COL13A1-201ENST00000354547 PRXQ9BXM0 1461 aa29.11■■■□□ 2.25
COL13A1-201ENST00000354547 HMGXB3Q12766 1538 aa29.11■■■□□ 2.25
COL13A1-201ENST00000354547 YTHDC1Q96MU7 727 aaKnown RBP29.09■■■□□ 2.25
COL13A1-201ENST00000354547 CENPBP07199 599 aaPredicted RBP29.08■■■□□ 2.25
COL13A1-201ENST00000354547 KIF27Q86VH2 1401 aa29.08■■■□□ 2.25
COL13A1-201ENST00000354547 ARAP1Q96P48 1450 aa29.04■■■□□ 2.24
COL13A1-201ENST00000354547 GTF3C3Q9Y5Q9 886 aa29.02■■■□□ 2.24
COL13A1-201ENST00000354547 CFTRP13569 1480 aa29.02■■■□□ 2.24
COL13A1-201ENST00000354547 ERICH3Q5RHP9 1530 aa29.01■■■□□ 2.23
COL13A1-201ENST00000354547 ITGAEP38570 1179 aa28.97■■■□□ 2.23
COL13A1-201ENST00000354547 MIER1Q8N108 512 aa28.94■■■□□ 2.22
COL13A1-201ENST00000354547 CUX2O14529 1486 aa28.87■■■□□ 2.21
COL13A1-201ENST00000354547 ARHGAP35Q9NRY4 1499 aa28.81■■■□□ 2.2
COL13A1-201ENST00000354547 IGF1RP08069 1367 aa28.79■■■□□ 2.2
COL13A1-201ENST00000354547 DHX57Q6P158 1386 aaKnown RBP28.78■■■□□ 2.2
COL13A1-201ENST00000354547 CADPSQ9ULU8 1353 aa28.78■■■□□ 2.2
COL13A1-201ENST00000354547 P3H3Q8IVL6 736 aa28.77■■■□□ 2.2
COL13A1-201ENST00000354547 ATP1B4Q9UN42 357 aaPredicted RBP28.76■■■□□ 2.19
COL13A1-201ENST00000354547 CARMIL1Q5VZK9 1371 aa28.71■■■□□ 2.19
COL13A1-201ENST00000354547 FGD5Q6ZNL6 1462 aa28.69■■■□□ 2.18
COL13A1-201ENST00000354547 CCNB3Q8WWL7 1395 aa28.68■■■□□ 2.18
COL13A1-201ENST00000354547 PELP1Q8IZL8 1130 aaKnown RBP28.67■■■□□ 2.18
COL13A1-201ENST00000354547 RRBP1Q9P2E9 1410 aaKnown RBP28.65■■■□□ 2.18
COL13A1-201ENST00000354547 CLSPNQ9HAW4 1339 aa28.59■■■□□ 2.17
COL13A1-201ENST00000354547 CC2D2AQ9P2K1 1620 aa28.56■■■□□ 2.16
COL13A1-201ENST00000354547 FAM50AQ14320 339 aaKnown RBP28.56■■■□□ 2.16
COL13A1-201ENST00000354547 PRDM2Q13029 1718 aa28.55■■■□□ 2.16
COL13A1-201ENST00000354547 FANCD2Q9BXW9 1451 aa28.52■■■□□ 2.16
COL13A1-201ENST00000354547 RAD54L2Q9Y4B4 1467 aa28.51■■■□□ 2.15
COL13A1-201ENST00000354547 RAB3GAP2Q9H2M9 1393 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms