Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
PCDHA2Q9Y5H9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
PCDHA2Q9Y5H9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PCDHA2Q9Y5H9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PCDHA2Q9Y5H9 AP006261.1-201ENST00000584783 668 ntBASIC30.57■■■□□ 2.48
PCDHA2Q9Y5H9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
PCDHA2Q9Y5H9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.55■■■□□ 2.48
PCDHA2Q9Y5H9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 AL162393.1-201ENST00000437852 946 ntBASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.54■■■□□ 2.48
PCDHA2Q9Y5H9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.53■■■□□ 2.48
PCDHA2Q9Y5H9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
PCDHA2Q9Y5H9 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
PCDHA2Q9Y5H9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
PCDHA2Q9Y5H9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
PCDHA2Q9Y5H9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.51■■■□□ 2.47
PCDHA2Q9Y5H9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.51■■■□□ 2.47
PCDHA2Q9Y5H9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
PCDHA2Q9Y5H9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
PCDHA2Q9Y5H9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
PCDHA2Q9Y5H9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
PCDHA2Q9Y5H9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
PCDHA2Q9Y5H9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.49■■■□□ 2.47
PCDHA2Q9Y5H9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
PCDHA2Q9Y5H9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.49■■■□□ 2.47
PCDHA2Q9Y5H9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
PCDHA2Q9Y5H9 AC120057.4-201ENST00000624722 1615 ntBASIC30.48■■■□□ 2.47
PCDHA2Q9Y5H9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
PCDHA2Q9Y5H9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
PCDHA2Q9Y5H9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
PCDHA2Q9Y5H9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.46■■■□□ 2.47
PCDHA2Q9Y5H9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
PCDHA2Q9Y5H9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
PCDHA2Q9Y5H9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.42■■■□□ 2.46
PCDHA2Q9Y5H9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
PCDHA2Q9Y5H9 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
PCDHA2Q9Y5H9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
PCDHA2Q9Y5H9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
PCDHA2Q9Y5H9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
PCDHA2Q9Y5H9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.38■■■□□ 2.45
PCDHA2Q9Y5H9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.38■■■□□ 2.45
PCDHA2Q9Y5H9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
PCDHA2Q9Y5H9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
PCDHA2Q9Y5H9 MIR3665-201ENST00000578708 105 ntBASIC30.37■■■□□ 2.45
PCDHA2Q9Y5H9 WASH5P-204ENST00000632292 975 ntBASIC30.37■■■□□ 2.45
PCDHA2Q9Y5H9 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.37■■■□□ 2.45
PCDHA2Q9Y5H9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
PCDHA2Q9Y5H9 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.35■■■□□ 2.45
PCDHA2Q9Y5H9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
PCDHA2Q9Y5H9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
PCDHA2Q9Y5H9 MIR762-201ENST00000390236 83 ntBASIC30.34■■■□□ 2.45
PCDHA2Q9Y5H9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
PCDHA2Q9Y5H9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.33■■■□□ 2.45
PCDHA2Q9Y5H9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
PCDHA2Q9Y5H9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.33■■■□□ 2.45
PCDHA2Q9Y5H9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
PCDHA2Q9Y5H9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
PCDHA2Q9Y5H9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
PCDHA2Q9Y5H9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.29■■■□□ 2.44
PCDHA2Q9Y5H9 DUX4L28-201ENST00000623687 678 ntBASIC30.28■■■□□ 2.44
PCDHA2Q9Y5H9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
PCDHA2Q9Y5H9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
PCDHA2Q9Y5H9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
PCDHA2Q9Y5H9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
PCDHA2Q9Y5H9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.27■■■□□ 2.44
PCDHA2Q9Y5H9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
PCDHA2Q9Y5H9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
PCDHA2Q9Y5H9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
PCDHA2Q9Y5H9 AC005559.1-201ENST00000589661 871 ntBASIC30.24■■■□□ 2.43
PCDHA2Q9Y5H9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
PCDHA2Q9Y5H9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.23■■■□□ 2.43
PCDHA2Q9Y5H9 AC087741.3-201ENST00000624270 1347 ntBASIC30.22■■■□□ 2.43
PCDHA2Q9Y5H9 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.22■■■□□ 2.43
PCDHA2Q9Y5H9 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.22■■■□□ 2.43
PCDHA2Q9Y5H9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
PCDHA2Q9Y5H9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
PCDHA2Q9Y5H9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.2■■■□□ 2.43
PCDHA2Q9Y5H9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
PCDHA2Q9Y5H9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.19■■■□□ 2.42
PCDHA2Q9Y5H9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
PCDHA2Q9Y5H9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
PCDHA2Q9Y5H9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
PCDHA2Q9Y5H9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
PCDHA2Q9Y5H9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.16■■■□□ 2.42
PCDHA2Q9Y5H9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.14■■■□□ 2.42
PCDHA2Q9Y5H9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PCDHA2Q9Y5H9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.13■■■□□ 2.41
PCDHA2Q9Y5H9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
PCDHA2Q9Y5H9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
PCDHA2Q9Y5H9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms