Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.68■■■□□ 2.66
HTTP42858 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.67■■■□□ 2.66
HTTP42858 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
HTTP42858 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.66■■■□□ 2.66
HTTP42858 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
HTTP42858 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.63■■■□□ 2.65
HTTP42858 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
HTTP42858 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.61■■■□□ 2.65
HTTP42858 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
HTTP42858 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
HTTP42858 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
HTTP42858 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
HTTP42858 MIR3648-2-201ENST00000581792 180 ntBASIC31.56■■■□□ 2.64
HTTP42858 MIR3648-1-201ENST00000615959 180 ntBASIC31.56■■■□□ 2.64
HTTP42858 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
HTTP42858 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
HTTP42858 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
HTTP42858 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.54■■■□□ 2.64
HTTP42858 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.53■■■□□ 2.64
HTTP42858 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.53■■■□□ 2.64
HTTP42858 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.51■■■□□ 2.63
HTTP42858 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
HTTP42858 CR559946.2-201ENST00000623684 991 ntBASIC31.5■■■□□ 2.63
HTTP42858 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.5■■■□□ 2.63
HTTP42858 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.49■■■□□ 2.63
HTTP42858 AC016575.1-201ENST00000607026 382 ntBASIC31.48■■■□□ 2.63
HTTP42858 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
HTTP42858 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
HTTP42858 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
HTTP42858 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
HTTP42858 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HTTP42858 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HTTP42858 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
HTTP42858 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.41■■■□□ 2.62
HTTP42858 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
HTTP42858 DUX4L29-201ENST00000425409 679 ntBASIC31.39■■■□□ 2.62
HTTP42858 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
HTTP42858 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
HTTP42858 AC021231.2-201ENST00000594613 730 ntBASIC31.39■■■□□ 2.62
HTTP42858 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
HTTP42858 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.38■■■□□ 2.61
HTTP42858 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.38■■■□□ 2.61
HTTP42858 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
HTTP42858 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.38■■■□□ 2.61
HTTP42858 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.37■■■□□ 2.61
HTTP42858 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.36■■■□□ 2.61
HTTP42858 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
HTTP42858 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
HTTP42858 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
HTTP42858 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
HTTP42858 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
HTTP42858 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.32■■■□□ 2.6
HTTP42858 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HTTP42858 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.31■■■□□ 2.6
HTTP42858 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.31■■■□□ 2.6
HTTP42858 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
HTTP42858 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HTTP42858 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.28■■■□□ 2.6
HTTP42858 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
HTTP42858 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.27■■■□□ 2.6
HTTP42858 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HTTP42858 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
HTTP42858 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
HTTP42858 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.25■■■□□ 2.59
HTTP42858 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
HTTP42858 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
HTTP42858 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
HTTP42858 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.22■■■□□ 2.59
HTTP42858 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
HTTP42858 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
HTTP42858 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
HTTP42858 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.2■■■□□ 2.59
HTTP42858 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
HTTP42858 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.2■■■□□ 2.58
HTTP42858 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
HTTP42858 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.18■■■□□ 2.58
HTTP42858 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.17■■■□□ 2.58
HTTP42858 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
HTTP42858 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.17■■■□□ 2.58
HTTP42858 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.16■■■□□ 2.58
HTTP42858 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
HTTP42858 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
HTTP42858 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.13■■■□□ 2.57
HTTP42858 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
HTTP42858 LINC01971-201ENST00000617888 1048 ntBASIC31.11■■■□□ 2.57
HTTP42858 WASH5P-204ENST00000632292 975 ntBASIC31.11■■■□□ 2.57
HTTP42858 RARRES2P2-201ENST00000394842 485 ntBASIC31.1■■■□□ 2.57
HTTP42858 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
HTTP42858 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.08■■■□□ 2.57
HTTP42858 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
HTTP42858 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
HTTP42858 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
HTTP42858 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
HTTP42858 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
HTTP42858 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HTTP42858 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HTTP42858 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
HTTP42858 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HTTP42858 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
HTTP42858 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms