Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SMKR1H3BMG3 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC19.87■□□□□ 0.77
SMKR1H3BMG3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SMKR1H3BMG3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMKR1H3BMG3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SMKR1H3BMG3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMKR1H3BMG3 AL161658.1-201ENST00000623641 1967 ntBASIC19.85■□□□□ 0.77
SMKR1H3BMG3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SMKR1H3BMG3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SMKR1H3BMG3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC19.83■□□□□ 0.76
SMKR1H3BMG3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMKR1H3BMG3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMKR1H3BMG3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMKR1H3BMG3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMKR1H3BMG3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMKR1H3BMG3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMKR1H3BMG3 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMKR1H3BMG3 AC015813.7-201ENST00000623294 581 ntBASIC19.79■□□□□ 0.76
SMKR1H3BMG3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMKR1H3BMG3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMKR1H3BMG3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMKR1H3BMG3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMKR1H3BMG3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMKR1H3BMG3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMKR1H3BMG3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SMKR1H3BMG3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMKR1H3BMG3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMKR1H3BMG3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMKR1H3BMG3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.72■□□□□ 0.75
SMKR1H3BMG3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMKR1H3BMG3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMKR1H3BMG3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMKR1H3BMG3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.7■□□□□ 0.74
SMKR1H3BMG3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMKR1H3BMG3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMKR1H3BMG3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMKR1H3BMG3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMKR1H3BMG3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
SMKR1H3BMG3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMKR1H3BMG3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMKR1H3BMG3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SMKR1H3BMG3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMKR1H3BMG3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMKR1H3BMG3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMKR1H3BMG3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMKR1H3BMG3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC19.61■□□□□ 0.73
SMKR1H3BMG3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMKR1H3BMG3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMKR1H3BMG3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SMKR1H3BMG3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMKR1H3BMG3 ST7-AS1-201ENST00000456775 1889 ntBASIC19.58■□□□□ 0.72
SMKR1H3BMG3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.58■□□□□ 0.72
SMKR1H3BMG3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
SMKR1H3BMG3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.57■□□□□ 0.72
SMKR1H3BMG3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMKR1H3BMG3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMKR1H3BMG3 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SMKR1H3BMG3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMKR1H3BMG3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SMKR1H3BMG3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMKR1H3BMG3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SMKR1H3BMG3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
SMKR1H3BMG3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMKR1H3BMG3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SMKR1H3BMG3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMKR1H3BMG3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMKR1H3BMG3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SMKR1H3BMG3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.44■□□□□ 0.7
SMKR1H3BMG3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms