Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
LSM4Q9Y4Z0 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC22.22■■□□□ 1.15
LSM4Q9Y4Z0 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LSM4Q9Y4Z0 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC22.2■■□□□ 1.15
LSM4Q9Y4Z0 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC22.19■■□□□ 1.14
LSM4Q9Y4Z0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
LSM4Q9Y4Z0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LSM4Q9Y4Z0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC22.18■■□□□ 1.14
LSM4Q9Y4Z0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LSM4Q9Y4Z0 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.15■■□□□ 1.14
LSM4Q9Y4Z0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LSM4Q9Y4Z0 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LSM4Q9Y4Z0 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LSM4Q9Y4Z0 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
LSM4Q9Y4Z0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LSM4Q9Y4Z0 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
LSM4Q9Y4Z0 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC22.1■■□□□ 1.13
LSM4Q9Y4Z0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
LSM4Q9Y4Z0 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LSM4Q9Y4Z0 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM4Q9Y4Z0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM4Q9Y4Z0 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC22.06■■□□□ 1.12
LSM4Q9Y4Z0 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LSM4Q9Y4Z0 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LSM4Q9Y4Z0 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC22.05■■□□□ 1.12
LSM4Q9Y4Z0 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC22.05■■□□□ 1.12
LSM4Q9Y4Z0 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC22.04■■□□□ 1.12
LSM4Q9Y4Z0 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LSM4Q9Y4Z0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC22.04■■□□□ 1.12
LSM4Q9Y4Z0 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LSM4Q9Y4Z0 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
LSM4Q9Y4Z0 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LSM4Q9Y4Z0 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM4Q9Y4Z0 DYNLL1-208ENST00000550178 581 ntBASIC22.01■■□□□ 1.11
LSM4Q9Y4Z0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM4Q9Y4Z0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LSM4Q9Y4Z0 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
LSM4Q9Y4Z0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LSM4Q9Y4Z0 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
LSM4Q9Y4Z0 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM4Q9Y4Z0 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LSM4Q9Y4Z0 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.99■■□□□ 1.11
LSM4Q9Y4Z0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LSM4Q9Y4Z0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LSM4Q9Y4Z0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LSM4Q9Y4Z0 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.97■■□□□ 1.11
LSM4Q9Y4Z0 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LSM4Q9Y4Z0 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC21.94■■□□□ 1.1
LSM4Q9Y4Z0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.94■■□□□ 1.1
LSM4Q9Y4Z0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.92■■□□□ 1.1
LSM4Q9Y4Z0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LSM4Q9Y4Z0 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LSM4Q9Y4Z0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LSM4Q9Y4Z0 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
LSM4Q9Y4Z0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
LSM4Q9Y4Z0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.87■■□□□ 1.09
LSM4Q9Y4Z0 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LSM4Q9Y4Z0 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.87■■□□□ 1.09
LSM4Q9Y4Z0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LSM4Q9Y4Z0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.86■■□□□ 1.09
LSM4Q9Y4Z0 AL031258.1-201ENST00000623562 325 ntBASIC21.86■■□□□ 1.09
LSM4Q9Y4Z0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
LSM4Q9Y4Z0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LSM4Q9Y4Z0 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
LSM4Q9Y4Z0 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LSM4Q9Y4Z0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
LSM4Q9Y4Z0 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LSM4Q9Y4Z0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LSM4Q9Y4Z0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LSM4Q9Y4Z0 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LSM4Q9Y4Z0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.8■■□□□ 1.08
LSM4Q9Y4Z0 AC120057.4-201ENST00000624722 1615 ntBASIC21.8■■□□□ 1.08
LSM4Q9Y4Z0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC21.8■■□□□ 1.08
LSM4Q9Y4Z0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LSM4Q9Y4Z0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LSM4Q9Y4Z0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM4Q9Y4Z0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LSM4Q9Y4Z0 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LSM4Q9Y4Z0 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM4Q9Y4Z0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LSM4Q9Y4Z0 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LSM4Q9Y4Z0 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
LSM4Q9Y4Z0 ABCB10P1-201ENST00000614297 2181 ntBASIC21.76■■□□□ 1.07
LSM4Q9Y4Z0 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LSM4Q9Y4Z0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM4Q9Y4Z0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LSM4Q9Y4Z0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LSM4Q9Y4Z0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.73■■□□□ 1.07
LSM4Q9Y4Z0 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LSM4Q9Y4Z0 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.73■■□□□ 1.07
LSM4Q9Y4Z0 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.73■■□□□ 1.07
LSM4Q9Y4Z0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LSM4Q9Y4Z0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LSM4Q9Y4Z0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LSM4Q9Y4Z0 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.71■■□□□ 1.07
LSM4Q9Y4Z0 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.7■■□□□ 1.06
LSM4Q9Y4Z0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LSM4Q9Y4Z0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.69■■□□□ 1.06
LSM4Q9Y4Z0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.68■■□□□ 1.06
LSM4Q9Y4Z0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms