Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.01■■■□□ 2.4
CLDND1Q9NY35 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CLDND1Q9NY35 ABHD17AP4-201ENST00000411545 909 ntBASIC30■■■□□ 2.39
CLDND1Q9NY35 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
CLDND1Q9NY35 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
CLDND1Q9NY35 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CLDND1Q9NY35 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.95■■■□□ 2.39
CLDND1Q9NY35 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
CLDND1Q9NY35 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CLDND1Q9NY35 AL133380.1-201ENST00000506013 324 ntBASIC29.94■■■□□ 2.38
CLDND1Q9NY35 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC29.94■■■□□ 2.38
CLDND1Q9NY35 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
CLDND1Q9NY35 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.93■■■□□ 2.38
CLDND1Q9NY35 MIR3665-201ENST00000578708 105 ntBASIC29.91■■■□□ 2.38
CLDND1Q9NY35 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLDND1Q9NY35 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.9■■■□□ 2.38
CLDND1Q9NY35 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.89■■■□□ 2.38
CLDND1Q9NY35 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.88■■■□□ 2.37
CLDND1Q9NY35 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.86■■■□□ 2.37
CLDND1Q9NY35 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CLDND1Q9NY35 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
CLDND1Q9NY35 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.84■■■□□ 2.37
CLDND1Q9NY35 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CLDND1Q9NY35 HLA-V-202ENST00000446817 847 ntBASIC29.78■■■□□ 2.36
CLDND1Q9NY35 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC29.78■■■□□ 2.36
CLDND1Q9NY35 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CLDND1Q9NY35 AC087741.3-201ENST00000624270 1347 ntBASIC29.77■■■□□ 2.36
CLDND1Q9NY35 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
CLDND1Q9NY35 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CLDND1Q9NY35 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
CLDND1Q9NY35 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
CLDND1Q9NY35 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.76■■■□□ 2.35
CLDND1Q9NY35 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CLDND1Q9NY35 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CLDND1Q9NY35 DUX4L28-201ENST00000623687 678 ntBASIC29.72■■■□□ 2.35
CLDND1Q9NY35 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.71■■■□□ 2.35
CLDND1Q9NY35 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.69■■■□□ 2.34
CLDND1Q9NY35 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.68■■■□□ 2.34
CLDND1Q9NY35 AC044849.2-201ENST00000606596 710 ntBASIC29.68■■■□□ 2.34
CLDND1Q9NY35 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CLDND1Q9NY35 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.66■■■□□ 2.34
CLDND1Q9NY35 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.66■■■□□ 2.34
CLDND1Q9NY35 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
CLDND1Q9NY35 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.64■■■□□ 2.34
CLDND1Q9NY35 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.63■■■□□ 2.33
CLDND1Q9NY35 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CLDND1Q9NY35 MIR762-201ENST00000390236 83 ntBASIC29.6■■■□□ 2.33
CLDND1Q9NY35 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CLDND1Q9NY35 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.59■■■□□ 2.33
CLDND1Q9NY35 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
CLDND1Q9NY35 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
CLDND1Q9NY35 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CLDND1Q9NY35 AC005559.1-201ENST00000589661 871 ntBASIC29.57■■■□□ 2.32
CLDND1Q9NY35 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.56■■■□□ 2.32
CLDND1Q9NY35 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.54■■■□□ 2.32
CLDND1Q9NY35 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
CLDND1Q9NY35 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CLDND1Q9NY35 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.53■■■□□ 2.32
CLDND1Q9NY35 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CLDND1Q9NY35 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
CLDND1Q9NY35 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CLDND1Q9NY35 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CLDND1Q9NY35 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.49■■■□□ 2.31
CLDND1Q9NY35 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.49■■■□□ 2.31
CLDND1Q9NY35 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.47■■■□□ 2.31
CLDND1Q9NY35 ZNRF2P2-203ENST00000454624 420 ntBASIC29.46■■■□□ 2.31
CLDND1Q9NY35 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.45■■■□□ 2.31
CLDND1Q9NY35 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.44■■■□□ 2.3
CLDND1Q9NY35 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.44■■■□□ 2.3
CLDND1Q9NY35 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.43■■■□□ 2.3
CLDND1Q9NY35 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.42■■■□□ 2.3
CLDND1Q9NY35 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.42■■■□□ 2.3
CLDND1Q9NY35 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
CLDND1Q9NY35 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.41■■■□□ 2.3
CLDND1Q9NY35 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
CLDND1Q9NY35 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CLDND1Q9NY35 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CLDND1Q9NY35 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
CLDND1Q9NY35 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.3■■■□□ 2.28
CLDND1Q9NY35 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.3■■■□□ 2.28
CLDND1Q9NY35 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CLDND1Q9NY35 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
CLDND1Q9NY35 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CLDND1Q9NY35 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
CLDND1Q9NY35 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CLDND1Q9NY35 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CLDND1Q9NY35 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.27■■■□□ 2.28
CLDND1Q9NY35 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CLDND1Q9NY35 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CLDND1Q9NY35 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.25■■■□□ 2.27
CLDND1Q9NY35 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.24■■■□□ 2.27
CLDND1Q9NY35 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CLDND1Q9NY35 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC29.23■■■□□ 2.27
CLDND1Q9NY35 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CLDND1Q9NY35 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
CLDND1Q9NY35 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.21■■■□□ 2.27
CLDND1Q9NY35 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CLDND1Q9NY35 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CLDND1Q9NY35 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.2■■■□□ 2.26
CLDND1Q9NY35 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms