Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC38.58■■■■□ 3.77
ABCA3Q99758 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC38.58■■■■□ 3.77
ABCA3Q99758 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC38.55■■■■□ 3.76
ABCA3Q99758 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC38.54■■■■□ 3.76
ABCA3Q99758 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC38.54■■■■□ 3.76
ABCA3Q99758 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
ABCA3Q99758 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC38.52■■■■□ 3.76
ABCA3Q99758 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC38.52■■■■□ 3.76
ABCA3Q99758 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC38.49■■■■□ 3.75
ABCA3Q99758 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC38.49■■■■□ 3.75
ABCA3Q99758 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
ABCA3Q99758 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC38.49■■■■□ 3.75
ABCA3Q99758 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC38.47■■■■□ 3.75
ABCA3Q99758 DUX4L28-201ENST00000623687 678 ntBASIC38.46■■■■□ 3.75
ABCA3Q99758 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
ABCA3Q99758 EBPL-202ENST00000378268 680 ntTSL 3 BASIC38.44■■■■□ 3.74
ABCA3Q99758 MIR7108-201ENST00000614319 87 ntBASIC38.44■■■■□ 3.74
ABCA3Q99758 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC38.43■■■■□ 3.74
ABCA3Q99758 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
ABCA3Q99758 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC38.41■■■■□ 3.74
ABCA3Q99758 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC38.4■■■■□ 3.74
ABCA3Q99758 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC38.39■■■■□ 3.74
ABCA3Q99758 MLEC-202ENST00000412616 841 ntTSL 3 BASIC38.35■■■■□ 3.73
ABCA3Q99758 AC087741.3-201ENST00000624270 1347 ntBASIC38.34■■■■□ 3.73
ABCA3Q99758 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
ABCA3Q99758 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC38.34■■■■□ 3.73
ABCA3Q99758 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC38.34■■■■□ 3.73
ABCA3Q99758 MIR3665-201ENST00000578708 105 ntBASIC38.31■■■■□ 3.72
ABCA3Q99758 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC38.29■■■■□ 3.72
ABCA3Q99758 HLA-V-202ENST00000446817 847 ntBASIC38.27■■■■□ 3.72
ABCA3Q99758 AC044849.2-201ENST00000606596 710 ntBASIC38.26■■■■□ 3.71
ABCA3Q99758 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC38.24■■■■□ 3.71
ABCA3Q99758 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC38.24■■■■□ 3.71
ABCA3Q99758 ABHD17AP4-201ENST00000411545 909 ntBASIC38.24■■■■□ 3.71
ABCA3Q99758 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC38.19■■■■□ 3.7
ABCA3Q99758 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC38.18■■■■□ 3.7
ABCA3Q99758 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC38.18■■■■□ 3.7
ABCA3Q99758 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
ABCA3Q99758 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
ABCA3Q99758 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
ABCA3Q99758 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC38.16■■■■□ 3.7
ABCA3Q99758 PVT1-219ENST00000523427 938 ntTSL 3 BASIC38.15■■■■□ 3.7
ABCA3Q99758 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
ABCA3Q99758 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC38.09■■■■□ 3.69
ABCA3Q99758 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC38.09■■■■□ 3.69
ABCA3Q99758 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
ABCA3Q99758 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC38.07■■■■□ 3.69
ABCA3Q99758 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC38.07■■■■□ 3.68
ABCA3Q99758 AC005559.1-201ENST00000589661 871 ntBASIC38.06■■■■□ 3.68
ABCA3Q99758 MBP-237ENST00000579129 1052 ntTSL 5 BASIC38.05■■■■□ 3.68
ABCA3Q99758 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC38.04■■■■□ 3.68
ABCA3Q99758 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC38.04■■■■□ 3.68
ABCA3Q99758 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC38.04■■■■□ 3.68
ABCA3Q99758 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
ABCA3Q99758 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC38.01■■■■□ 3.68
ABCA3Q99758 MIR762-201ENST00000390236 83 ntBASIC38.01■■■■□ 3.67
ABCA3Q99758 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC37.95■■■■□ 3.67
ABCA3Q99758 CHML-205ENST00000638160 705 ntTSL 3 BASIC37.94■■■■□ 3.66
ABCA3Q99758 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC37.93■■■■□ 3.66
ABCA3Q99758 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC37.92■■■■□ 3.66
ABCA3Q99758 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC37.92■■■■□ 3.66
ABCA3Q99758 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC37.91■■■■□ 3.66
ABCA3Q99758 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC37.91■■■■□ 3.66
ABCA3Q99758 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
ABCA3Q99758 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC37.9■■■■□ 3.66
ABCA3Q99758 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC37.9■■■■□ 3.66
ABCA3Q99758 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
ABCA3Q99758 DENR-202ENST00000455982 1052 ntTSL 5 BASIC37.87■■■■□ 3.65
ABCA3Q99758 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC37.87■■■■□ 3.65
ABCA3Q99758 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC37.86■■■■□ 3.65
ABCA3Q99758 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC37.86■■■■□ 3.65
ABCA3Q99758 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC37.85■■■■□ 3.65
ABCA3Q99758 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC37.83■■■■□ 3.65
ABCA3Q99758 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC37.8■■■■□ 3.64
ABCA3Q99758 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC37.78■■■■□ 3.64
ABCA3Q99758 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC37.78■■■■□ 3.64
ABCA3Q99758 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC37.77■■■■□ 3.64
ABCA3Q99758 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
ABCA3Q99758 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC37.75■■■■□ 3.63
ABCA3Q99758 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC37.7■■■■□ 3.63
ABCA3Q99758 RPS2-202ENST00000526522 924 ntTSL 2 BASIC37.7■■■■□ 3.63
ABCA3Q99758 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC37.69■■■■□ 3.62
ABCA3Q99758 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
ABCA3Q99758 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC37.67■■■■□ 3.62
ABCA3Q99758 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
ABCA3Q99758 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC37.67■■■■□ 3.62
ABCA3Q99758 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC37.66■■■■□ 3.62
ABCA3Q99758 BOD1-206ENST00000480951 814 ntTSL 2 BASIC37.66■■■■□ 3.62
ABCA3Q99758 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
ABCA3Q99758 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
ABCA3Q99758 HGH1-207ENST00000628266 258 ntTSL 5 BASIC37.64■■■■□ 3.62
ABCA3Q99758 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC37.63■■■■□ 3.61
ABCA3Q99758 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC37.63■■■■□ 3.61
ABCA3Q99758 ZNRF2P2-203ENST00000454624 420 ntBASIC37.61■■■■□ 3.61
ABCA3Q99758 RPS2-209ENST00000529806 993 ntTSL 3 BASIC37.6■■■■□ 3.61
ABCA3Q99758 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC37.58■■■■□ 3.61
ABCA3Q99758 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC37.58■■■■□ 3.61
ABCA3Q99758 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC37.57■■■■□ 3.6
ABCA3Q99758 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
ABCA3Q99758 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms