Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.41■■□□□ 1.66
COL12A1Q99715 AC087741.3-201ENST00000624270 1347 ntBASIC25.41■■□□□ 1.66
COL12A1Q99715 MIR3665-201ENST00000578708 105 ntBASIC25.39■■□□□ 1.66
COL12A1Q99715 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.38■■□□□ 1.65
COL12A1Q99715 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.38■■□□□ 1.65
COL12A1Q99715 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL12A1Q99715 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL12A1Q99715 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.35■■□□□ 1.65
COL12A1Q99715 MIR4449-201ENST00000578365 66 ntBASIC25.32■■□□□ 1.64
COL12A1Q99715 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC25.31■■□□□ 1.64
COL12A1Q99715 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.31■■□□□ 1.64
COL12A1Q99715 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC25.29■■□□□ 1.64
COL12A1Q99715 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.28■■□□□ 1.64
COL12A1Q99715 AC044849.2-201ENST00000606596 710 ntBASIC25.24■■□□□ 1.63
COL12A1Q99715 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
COL12A1Q99715 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC25.23■■□□□ 1.63
COL12A1Q99715 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.22■■□□□ 1.63
COL12A1Q99715 DUX4L28-201ENST00000623687 678 ntBASIC25.22■■□□□ 1.63
COL12A1Q99715 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
COL12A1Q99715 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL12A1Q99715 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.2■■□□□ 1.62
COL12A1Q99715 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.19■■□□□ 1.62
COL12A1Q99715 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.19■■□□□ 1.62
COL12A1Q99715 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.19■■□□□ 1.62
COL12A1Q99715 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
COL12A1Q99715 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
COL12A1Q99715 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
COL12A1Q99715 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
COL12A1Q99715 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL12A1Q99715 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL12A1Q99715 AC145285.7-201ENST00000614819 1539 ntBASIC25.15■■□□□ 1.62
COL12A1Q99715 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.13■■□□□ 1.61
COL12A1Q99715 HSD17B1P1-201ENST00000590052 955 ntBASIC25.12■■□□□ 1.61
COL12A1Q99715 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
COL12A1Q99715 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.11■■□□□ 1.61
COL12A1Q99715 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.11■■□□□ 1.61
COL12A1Q99715 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL12A1Q99715 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.1■■□□□ 1.61
COL12A1Q99715 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
COL12A1Q99715 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL12A1Q99715 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
COL12A1Q99715 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.05■■□□□ 1.6
COL12A1Q99715 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL12A1Q99715 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
COL12A1Q99715 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
COL12A1Q99715 AC005559.1-201ENST00000589661 871 ntBASIC25.04■■□□□ 1.6
COL12A1Q99715 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL12A1Q99715 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
COL12A1Q99715 MIR762-201ENST00000390236 83 ntBASIC25.01■■□□□ 1.6
COL12A1Q99715 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.01■■□□□ 1.59
COL12A1Q99715 ZNRF2P2-203ENST00000454624 420 ntBASIC25■■□□□ 1.59
COL12A1Q99715 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL12A1Q99715 AL133380.1-201ENST00000506013 324 ntBASIC24.99■■□□□ 1.59
COL12A1Q99715 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL12A1Q99715 MIR639-201ENST00000384974 98 ntBASIC24.98■■□□□ 1.59
COL12A1Q99715 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
COL12A1Q99715 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.96■■□□□ 1.59
COL12A1Q99715 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL12A1Q99715 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
COL12A1Q99715 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.93■■□□□ 1.58
COL12A1Q99715 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.93■■□□□ 1.58
COL12A1Q99715 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
COL12A1Q99715 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL12A1Q99715 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.91■■□□□ 1.58
COL12A1Q99715 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.9■■□□□ 1.58
COL12A1Q99715 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL12A1Q99715 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL12A1Q99715 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.9■■□□□ 1.58
COL12A1Q99715 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
COL12A1Q99715 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
COL12A1Q99715 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.88■■□□□ 1.57
COL12A1Q99715 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
COL12A1Q99715 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC24.85■■□□□ 1.57
COL12A1Q99715 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
COL12A1Q99715 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL12A1Q99715 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.83■■□□□ 1.57
COL12A1Q99715 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
COL12A1Q99715 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC24.81■■□□□ 1.56
COL12A1Q99715 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL12A1Q99715 MIR3648-2-201ENST00000581792 180 ntBASIC24.8■■□□□ 1.56
COL12A1Q99715 MIR3648-1-201ENST00000615959 180 ntBASIC24.8■■□□□ 1.56
COL12A1Q99715 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.79■■□□□ 1.56
COL12A1Q99715 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL12A1Q99715 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.78■■□□□ 1.56
COL12A1Q99715 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.78■■□□□ 1.56
COL12A1Q99715 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL12A1Q99715 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
COL12A1Q99715 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
COL12A1Q99715 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.72■■□□□ 1.55
COL12A1Q99715 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.71■■□□□ 1.55
COL12A1Q99715 AC016575.1-201ENST00000607026 382 ntBASIC24.7■■□□□ 1.54
COL12A1Q99715 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
COL12A1Q99715 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.69■■□□□ 1.54
COL12A1Q99715 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
COL12A1Q99715 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
COL12A1Q99715 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
COL12A1Q99715 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
COL12A1Q99715 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.66■■□□□ 1.54
COL12A1Q99715 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.65■■□□□ 1.54
COL12A1Q99715 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms