Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.51■■□□□ 1.35
CSPG4Q6UVK1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
CSPG4Q6UVK1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC23.51■■□□□ 1.35
CSPG4Q6UVK1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
CSPG4Q6UVK1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC23.47■■□□□ 1.35
CSPG4Q6UVK1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.47■■□□□ 1.35
CSPG4Q6UVK1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.46■■□□□ 1.35
CSPG4Q6UVK1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CSPG4Q6UVK1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CSPG4Q6UVK1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.45■■□□□ 1.34
CSPG4Q6UVK1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CSPG4Q6UVK1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CSPG4Q6UVK1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CSPG4Q6UVK1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.42■■□□□ 1.34
CSPG4Q6UVK1 MIR3665-201ENST00000578708 105 ntBASIC23.42■■□□□ 1.34
CSPG4Q6UVK1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSPG4Q6UVK1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CSPG4Q6UVK1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.39■■□□□ 1.33
CSPG4Q6UVK1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.38■■□□□ 1.33
CSPG4Q6UVK1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSPG4Q6UVK1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CSPG4Q6UVK1 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.38■■□□□ 1.33
CSPG4Q6UVK1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
CSPG4Q6UVK1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.33■■□□□ 1.33
CSPG4Q6UVK1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.31■■□□□ 1.32
CSPG4Q6UVK1 AC087741.3-201ENST00000624270 1347 ntBASIC23.3■■□□□ 1.32
CSPG4Q6UVK1 AL133380.1-201ENST00000506013 324 ntBASIC23.3■■□□□ 1.32
CSPG4Q6UVK1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.3■■□□□ 1.32
CSPG4Q6UVK1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CSPG4Q6UVK1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CSPG4Q6UVK1 AC044849.2-201ENST00000606596 710 ntBASIC23.25■■□□□ 1.31
CSPG4Q6UVK1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CSPG4Q6UVK1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.23■■□□□ 1.31
CSPG4Q6UVK1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CSPG4Q6UVK1 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.22■■□□□ 1.31
CSPG4Q6UVK1 DUX4L28-201ENST00000623687 678 ntBASIC23.21■■□□□ 1.31
CSPG4Q6UVK1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CSPG4Q6UVK1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CSPG4Q6UVK1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.2■■□□□ 1.3
CSPG4Q6UVK1 MIR762-201ENST00000390236 83 ntBASIC23.19■■□□□ 1.3
CSPG4Q6UVK1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.18■■□□□ 1.3
CSPG4Q6UVK1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.16■■□□□ 1.3
CSPG4Q6UVK1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.15■■□□□ 1.3
CSPG4Q6UVK1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
CSPG4Q6UVK1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.13■■□□□ 1.29
CSPG4Q6UVK1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.12■■□□□ 1.29
CSPG4Q6UVK1 AC005559.1-201ENST00000589661 871 ntBASIC23.11■■□□□ 1.29
CSPG4Q6UVK1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CSPG4Q6UVK1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.1■■□□□ 1.29
CSPG4Q6UVK1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.1■■□□□ 1.29
CSPG4Q6UVK1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.1■■□□□ 1.29
CSPG4Q6UVK1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CSPG4Q6UVK1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.09■■□□□ 1.29
CSPG4Q6UVK1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
CSPG4Q6UVK1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CSPG4Q6UVK1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.09■■□□□ 1.29
CSPG4Q6UVK1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSPG4Q6UVK1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CSPG4Q6UVK1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CSPG4Q6UVK1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CSPG4Q6UVK1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSPG4Q6UVK1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSPG4Q6UVK1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.05■■□□□ 1.28
CSPG4Q6UVK1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CSPG4Q6UVK1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CSPG4Q6UVK1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CSPG4Q6UVK1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.03■■□□□ 1.28
CSPG4Q6UVK1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CSPG4Q6UVK1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.01■■□□□ 1.27
CSPG4Q6UVK1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.01■■□□□ 1.27
CSPG4Q6UVK1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CSPG4Q6UVK1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23■■□□□ 1.27
CSPG4Q6UVK1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CSPG4Q6UVK1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CSPG4Q6UVK1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
CSPG4Q6UVK1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC22.98■■□□□ 1.27
CSPG4Q6UVK1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.98■■□□□ 1.27
CSPG4Q6UVK1 DENR-202ENST00000455982 1052 ntTSL 5 BASIC22.98■■□□□ 1.27
CSPG4Q6UVK1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.98■■□□□ 1.27
CSPG4Q6UVK1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.97■■□□□ 1.27
CSPG4Q6UVK1 MIR4449-201ENST00000578365 66 ntBASIC22.97■■□□□ 1.27
CSPG4Q6UVK1 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CSPG4Q6UVK1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.95■■□□□ 1.26
CSPG4Q6UVK1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC22.95■■□□□ 1.26
CSPG4Q6UVK1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CSPG4Q6UVK1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CSPG4Q6UVK1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.93■■□□□ 1.26
CSPG4Q6UVK1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC22.92■■□□□ 1.26
CSPG4Q6UVK1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CSPG4Q6UVK1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CSPG4Q6UVK1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CSPG4Q6UVK1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC22.91■■□□□ 1.26
CSPG4Q6UVK1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CSPG4Q6UVK1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC22.9■■□□□ 1.26
CSPG4Q6UVK1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CSPG4Q6UVK1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.88■■□□□ 1.25
CSPG4Q6UVK1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CSPG4Q6UVK1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
CSPG4Q6UVK1 ZNRF2P2-203ENST00000454624 420 ntBASIC22.87■■□□□ 1.25
CSPG4Q6UVK1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms