Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL4A4P53420 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A4P53420 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A4P53420 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A4P53420 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.47■■■□□ 2.47
COL4A4P53420 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.45■■■□□ 2.47
COL4A4P53420 AC145285.7-201ENST00000614819 1539 ntBASIC30.43■■■□□ 2.46
COL4A4P53420 AL133380.1-201ENST00000506013 324 ntBASIC30.42■■■□□ 2.46
COL4A4P53420 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL4A4P53420 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.39■■■□□ 2.46
COL4A4P53420 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
COL4A4P53420 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
COL4A4P53420 MIR7108-201ENST00000614319 87 ntBASIC30.38■■■□□ 2.45
COL4A4P53420 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL4A4P53420 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL4A4P53420 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
COL4A4P53420 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.36■■■□□ 2.45
COL4A4P53420 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.33■■■□□ 2.45
COL4A4P53420 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.32■■■□□ 2.44
COL4A4P53420 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A4P53420 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL4A4P53420 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL4A4P53420 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.3■■■□□ 2.44
COL4A4P53420 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A4P53420 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL4A4P53420 HLA-V-202ENST00000446817 847 ntBASIC30.3■■■□□ 2.44
COL4A4P53420 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL4A4P53420 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
COL4A4P53420 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.29■■■□□ 2.44
COL4A4P53420 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.29■■■□□ 2.44
COL4A4P53420 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL4A4P53420 DUX4L28-201ENST00000623687 678 ntBASIC30.27■■■□□ 2.44
COL4A4P53420 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL4A4P53420 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.26■■■□□ 2.43
COL4A4P53420 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.26■■■□□ 2.43
COL4A4P53420 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL4A4P53420 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
COL4A4P53420 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL4A4P53420 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.23■■■□□ 2.43
COL4A4P53420 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL4A4P53420 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.23■■■□□ 2.43
COL4A4P53420 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL4A4P53420 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.21■■■□□ 2.43
COL4A4P53420 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.2■■■□□ 2.43
COL4A4P53420 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
COL4A4P53420 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.18■■■□□ 2.42
COL4A4P53420 MIR3665-201ENST00000578708 105 ntBASIC30.18■■■□□ 2.42
COL4A4P53420 ABHD17AP4-201ENST00000411545 909 ntBASIC30.17■■■□□ 2.42
COL4A4P53420 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.17■■■□□ 2.42
COL4A4P53420 AC087741.3-201ENST00000624270 1347 ntBASIC30.17■■■□□ 2.42
COL4A4P53420 AC044849.2-201ENST00000606596 710 ntBASIC30.17■■■□□ 2.42
COL4A4P53420 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
COL4A4P53420 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.14■■■□□ 2.42
COL4A4P53420 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.41
COL4A4P53420 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL4A4P53420 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
COL4A4P53420 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
COL4A4P53420 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.07■■■□□ 2.4
COL4A4P53420 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.06■■■□□ 2.4
COL4A4P53420 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
COL4A4P53420 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
COL4A4P53420 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.01■■■□□ 2.39
COL4A4P53420 AC005559.1-201ENST00000589661 871 ntBASIC29.98■■■□□ 2.39
COL4A4P53420 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.98■■■□□ 2.39
COL4A4P53420 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.97■■■□□ 2.39
COL4A4P53420 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL4A4P53420 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.95■■■□□ 2.39
COL4A4P53420 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.95■■■□□ 2.39
COL4A4P53420 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
COL4A4P53420 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
COL4A4P53420 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
COL4A4P53420 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.93■■■□□ 2.38
COL4A4P53420 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL4A4P53420 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
COL4A4P53420 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL4A4P53420 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL4A4P53420 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
COL4A4P53420 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL4A4P53420 MIR762-201ENST00000390236 83 ntBASIC29.89■■■□□ 2.38
COL4A4P53420 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
COL4A4P53420 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
COL4A4P53420 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.88■■■□□ 2.37
COL4A4P53420 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.86■■■□□ 2.37
COL4A4P53420 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.86■■■□□ 2.37
COL4A4P53420 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.86■■■□□ 2.37
COL4A4P53420 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.85■■■□□ 2.37
COL4A4P53420 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.84■■■□□ 2.37
COL4A4P53420 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.83■■■□□ 2.37
COL4A4P53420 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL4A4P53420 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL4A4P53420 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.8■■■□□ 2.36
COL4A4P53420 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.8■■■□□ 2.36
COL4A4P53420 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL4A4P53420 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.79■■■□□ 2.36
COL4A4P53420 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL4A4P53420 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL4A4P53420 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.75■■■□□ 2.35
COL4A4P53420 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.74■■■□□ 2.35
COL4A4P53420 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.73■■■□□ 2.35
COL4A4P53420 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.72■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms