Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HLA-V-202ENST00000446817 847 ntBASIC35.43■■■■□ 3.26
BRCA1P38398 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.43■■■■□ 3.26
BRCA1P38398 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
BRCA1P38398 MVK-208ENST00000539696 608 ntTSL 5 BASIC35.41■■■■□ 3.26
BRCA1P38398 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
BRCA1P38398 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
BRCA1P38398 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC35.4■■■■□ 3.26
BRCA1P38398 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
BRCA1P38398 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.37■■■■□ 3.25
BRCA1P38398 ABHD17AP4-201ENST00000411545 909 ntBASIC35.37■■■■□ 3.25
BRCA1P38398 DUX4L28-201ENST00000623687 678 ntBASIC35.37■■■■□ 3.25
BRCA1P38398 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC35.36■■■■□ 3.25
BRCA1P38398 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.35■■■■□ 3.25
BRCA1P38398 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
BRCA1P38398 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC35.31■■■■□ 3.24
BRCA1P38398 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.3■■■■□ 3.24
BRCA1P38398 MIR3665-201ENST00000578708 105 ntBASIC35.3■■■■□ 3.24
BRCA1P38398 AC087741.3-201ENST00000624270 1347 ntBASIC35.3■■■■□ 3.24
BRCA1P38398 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
BRCA1P38398 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.26■■■■□ 3.24
BRCA1P38398 AC044849.2-201ENST00000606596 710 ntBASIC35.26■■■■□ 3.23
BRCA1P38398 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
BRCA1P38398 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.24■■■■□ 3.23
BRCA1P38398 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
BRCA1P38398 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.22■■■■□ 3.23
BRCA1P38398 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC35.21■■■■□ 3.23
BRCA1P38398 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC35.21■■■■□ 3.23
BRCA1P38398 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.2■■■■□ 3.22
BRCA1P38398 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC35.18■■■■□ 3.22
BRCA1P38398 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC35.18■■■■□ 3.22
BRCA1P38398 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.17■■■■□ 3.22
BRCA1P38398 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
BRCA1P38398 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC35.16■■■■□ 3.22
BRCA1P38398 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.13■■■■□ 3.21
BRCA1P38398 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.13■■■■□ 3.21
BRCA1P38398 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.13■■■■□ 3.21
BRCA1P38398 ILK-212ENST00000532063 1617 ntTSL 2 BASIC35.13■■■■□ 3.21
BRCA1P38398 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.12■■■■□ 3.21
BRCA1P38398 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC35.1■■■■□ 3.21
BRCA1P38398 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.06■■■■□ 3.2
BRCA1P38398 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.03■■■■□ 3.2
BRCA1P38398 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.01■■■■□ 3.2
BRCA1P38398 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
BRCA1P38398 AC005559.1-201ENST00000589661 871 ntBASIC35■■■■□ 3.19
BRCA1P38398 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC34.99■■■■□ 3.19
BRCA1P38398 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
BRCA1P38398 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
BRCA1P38398 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
BRCA1P38398 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC34.93■■■■□ 3.18
BRCA1P38398 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.92■■■■□ 3.18
BRCA1P38398 MIR762-201ENST00000390236 83 ntBASIC34.91■■■■□ 3.18
BRCA1P38398 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
BRCA1P38398 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.91■■■■□ 3.18
BRCA1P38398 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
BRCA1P38398 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
BRCA1P38398 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
BRCA1P38398 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.9■■■■□ 3.18
BRCA1P38398 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.9■■■■□ 3.18
BRCA1P38398 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.9■■■■□ 3.18
BRCA1P38398 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.88■■■■□ 3.17
BRCA1P38398 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC34.88■■■■□ 3.17
BRCA1P38398 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.87■■■■□ 3.17
BRCA1P38398 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
BRCA1P38398 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.85■■■■□ 3.17
BRCA1P38398 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
BRCA1P38398 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.79■■■■□ 3.16
BRCA1P38398 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.78■■■■□ 3.16
BRCA1P38398 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
BRCA1P38398 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC34.75■■■■□ 3.15
BRCA1P38398 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
BRCA1P38398 DENR-202ENST00000455982 1052 ntTSL 5 BASIC34.74■■■■□ 3.15
BRCA1P38398 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
BRCA1P38398 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC34.72■■■■□ 3.15
BRCA1P38398 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
BRCA1P38398 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
BRCA1P38398 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.71■■■■□ 3.15
BRCA1P38398 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.7■■■■□ 3.15
BRCA1P38398 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC34.7■■■■□ 3.14
BRCA1P38398 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
BRCA1P38398 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC34.68■■■■□ 3.14
BRCA1P38398 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.68■■■■□ 3.14
BRCA1P38398 ZNRF2P2-203ENST00000454624 420 ntBASIC34.67■■■■□ 3.14
BRCA1P38398 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.67■■■■□ 3.14
BRCA1P38398 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
BRCA1P38398 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
BRCA1P38398 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC34.64■■■■□ 3.14
BRCA1P38398 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC34.64■■■■□ 3.14
BRCA1P38398 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.62■■■■□ 3.13
BRCA1P38398 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
BRCA1P38398 MIR4449-201ENST00000578365 66 ntBASIC34.6■■■■□ 3.13
BRCA1P38398 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
BRCA1P38398 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.58■■■■□ 3.13
BRCA1P38398 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BRCA1P38398 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BRCA1P38398 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.56■■■■□ 3.12
BRCA1P38398 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
BRCA1P38398 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.52■■■■□ 3.12
BRCA1P38398 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC34.5■■■■□ 3.11
BRCA1P38398 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.5■■■■□ 3.11
BRCA1P38398 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms