Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.635e-7■□□□□ 8.5
YBX3P16989 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.565e-7■□□□□ 8.5
YBX3P16989 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.375e-7■□□□□ 8.5
YBX3P16989 DDX42-215ENST00000582985 543 ntTSL 413.23□□□□□ -0.295e-7■□□□□ 8.5
YBX3P16989 DDX42-214ENST00000581767 2244 nt11.5□□□□□ -0.575e-7■□□□□ 8.5
YBX3P16989 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC9.39□□□□□ -0.915e-7■□□□□ 8.5
YBX3P16989 DDX42-217ENST00000584010 3929 ntTSL 28.29□□□□□ -1.085e-7■□□□□ 8.5
YBX3P16989 DDX42-207ENST00000578593 2919 ntTSL 27.32□□□□□ -1.245e-7■□□□□ 8.5
YBX3P16989 DDX42-210ENST00000579539 571 ntTSL 26.44□□□□□ -1.385e-7■□□□□ 8.5
YBX3P16989 PTMA-208ENST00000448874 1108 ntTSL 222.7■■□□□ 1.223e-7■□□□□ 8.5
YBX3P16989 PTMA-212ENST00000481928 1635 ntTSL 320.35■□□□□ 0.853e-7■□□□□ 8.5
YBX3P16989 PTMA-211ENST00000468027 621 ntTSL 1 (best)17.01■□□□□ 0.313e-7■□□□□ 8.5
YBX3P16989 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.123e-7■□□□□ 8.5
YBX3P16989 PTMA-209ENST00000466801 784 ntTSL 514.26□□□□□ -0.133e-7■□□□□ 8.5
YBX3P16989 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.263e-7■□□□□ 8.5
YBX3P16989 PTMA-203ENST00000409321 735 ntTSL 3 BASIC12.96□□□□□ -0.333e-7■□□□□ 8.5
YBX3P16989 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC12.88□□□□□ -0.353e-7■□□□□ 8.5
YBX3P16989 RPL24-204ENST00000470961 572 ntTSL 215.28■□□□□ 0.041e-64■□□□□ 8.5
YBX3P16989 SND1-214ENST00000489417 1447 ntTSL 224.73■■□□□ 1.553e-11■□□□□ 8.5
YBX3P16989 SND1-212ENST00000485871 597 ntTSL 314□□□□□ -0.173e-11■□□□□ 8.5
YBX3P16989 PTPRF-208ENST00000437607 788 ntTSL 1 (best)16.61■□□□□ 0.254e-11■□□□□ 8.5
YBX3P16989 AL049839.2-201ENST00000553947 3067 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.91e-9■□□□□ 8.5
YBX3P16989 PSMC2-206ENST00000640277 1357 ntTSL 5 BASIC12.8□□□□□ -0.362e-6■□□□□ 8.5
YBX3P16989 PSMC2-201ENST00000292644 2637 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.972e-6■□□□□ 8.5
YBX3P16989 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.992e-6■□□□□ 8.5
YBX3P16989 TRIP12-216ENST00000487178 977 ntTSL 27.88□□□□□ -1.158e-7■□□□□ 8.5
YBX3P16989 FN1-216ENST00000469569 629 ntTSL 211.61□□□□□ -0.551e-323■□□□□ 8.5
YBX3P16989 FN1-218ENST00000473614 568 ntTSL 28.21□□□□□ -1.11e-323■□□□□ 8.5
YBX3P16989 EIF4A1-204ENST00000577731 574 ntTSL 23.59□□□□□ -1.838e-10■□□□□ 8.5
YBX3P16989 MRPL42-210ENST00000552938 999 ntTSL 213.25□□□□□ -0.293e-9■□□□□ 8.5
YBX3P16989 TSC2-225ENST00000569110 1687 ntTSL 519.64■□□□□ 0.737e-7■□□□□ 8.5
YBX3P16989 TSC2-226ENST00000569930 2621 ntTSL 219.5■□□□□ 0.717e-7■□□□□ 8.5
YBX3P16989 TSC2-216ENST00000497886 3248 ntTSL 213.83□□□□□ -0.27e-7■□□□□ 8.5
YBX3P16989 PTPRF-212ENST00000477970 3321 ntTSL 213.82□□□□□ -0.25e-7■□□□□ 8.5
YBX3P16989 LYPLA1-209ENST00000520896 578 ntTSL 425.7■■□□□ 1.75e-8■□□□□ 8.5
YBX3P16989 RPL37-203ENST00000507642 425 ntTSL 38.1□□□□□ -1.111e-17■□□□□ 8.5
YBX3P16989 MAN2A2-221ENST00000560451 5124 ntTSL 1 (best)20.29■□□□□ 0.845e-11■□□□□ 8.5
YBX3P16989 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.35e-11■□□□□ 8.5
YBX3P16989 MAN2A2-202ENST00000557865 2671 ntTSL 213.51□□□□□ -0.255e-11■□□□□ 8.5
YBX3P16989 MAN2A2-204ENST00000558161 4918 ntTSL 1 (best)12.49□□□□□ -0.415e-11■□□□□ 8.5
YBX3P16989 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.575e-11■□□□□ 8.5
YBX3P16989 HSPG2-208ENST00000471322 1602 ntTSL 521.66■■□□□ 1.063e-8■□□□□ 8.5
YBX3P16989 HSPG2-214ENST00000635682 921 ntTSL 519.9■□□□□ 0.783e-8■□□□□ 8.5
YBX3P16989 EIF3B-203ENST00000413917 962 ntTSL 226.38■■□□□ 1.817e-15■□□□□ 8.5
YBX3P16989 AFF1-206ENST00000507468 1486 ntTSL 1 (best)25.98■■□□□ 1.753e-16■□□□□ 8.5
YBX3P16989 AFF1-208ENST00000511722 638 ntTSL 424.6■■□□□ 1.533e-16■□□□□ 8.5
YBX3P16989 AFF1-204ENST00000503477 1478 ntTSL 219.91■□□□□ 0.783e-16■□□□□ 8.5
YBX3P16989 AFF1-205ENST00000504956 1668 ntTSL 219.8■□□□□ 0.763e-16■□□□□ 8.5
YBX3P16989 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.313e-16■□□□□ 8.5
YBX3P16989 AFF1-202ENST00000395146 9285 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.663e-16■□□□□ 8.5
YBX3P16989 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.933e-16■□□□□ 8.5
YBX3P16989 YWHAH-203ENST00000420430 502 ntTSL 24.87□□□□□ -1.633e-16■□□□□ 8.5
YBX3P16989 AFF1-207ENST00000511442 463 ntTSL 34.58□□□□□ -1.683e-16■□□□□ 8.5
YBX3P16989 STIP1-202ENST00000355603 528 ntTSL 37.61□□□□□ -1.192e-13■□□□□ 8.4
YBX3P16989 RPL24-203ENST00000469605 799 ntTSL 2 BASIC14.92□□□□□ -0.021e-31■□□□□ 8.4
YBX3P16989 RPL24-201ENST00000394077 623 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.271e-31■□□□□ 8.4
YBX3P16989 RPL24-202ENST00000464595 668 ntTSL 1 (best)10.29□□□□□ -0.761e-31■□□□□ 8.4
YBX3P16989 RPL24-206ENST00000495401 478 ntTSL 2 BASIC8.29□□□□□ -1.081e-31■□□□□ 8.4
YBX3P16989 CPOX-205ENST00000515041 1030 ntTSL 231.72■■■□□ 2.672e-13■□□□□ 8.4
YBX3P16989 CPOX-204ENST00000513674 826 ntTSL 530.87■■■□□ 2.532e-13■□□□□ 8.4
YBX3P16989 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.252e-13■□□□□ 8.4
YBX3P16989 FASN-209ENST00000636628 100 ntTSL 56.49□□□□□ -1.377e-38■□□□□ 8.4
YBX3P16989 IMPDH2-212ENST00000496837 760 ntTSL 219.83■□□□□ 0.771e-21■□□□□ 8.4
YBX3P16989 IMPDH2-210ENST00000485500 852 ntTSL 315.73■□□□□ 0.111e-21■□□□□ 8.4
YBX3P16989 NAP1L1-224ENST00000552056 1981 ntTSL 55.49□□□□□ -1.534e-12■□□□□ 8.4
YBX3P16989 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.881e-8■□□□□ 8.4
YBX3P16989 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC22.66■■□□□ 1.221e-8■□□□□ 8.4
YBX3P16989 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.61■□□□□ 0.891e-8■□□□□ 8.4
YBX3P16989 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC19.51■□□□□ 0.711e-8■□□□□ 8.4
YBX3P16989 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.74■□□□□ 0.431e-8■□□□□ 8.4
YBX3P16989 PDCD6-204ENST00000506909 458 ntTSL 317.59■□□□□ 0.411e-8■□□□□ 8.4
YBX3P16989 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.371e-8■□□□□ 8.4
YBX3P16989 PDCD6-210ENST00000513582 3500 ntTSL 211.16□□□□□ -0.621e-8■□□□□ 8.4
YBX3P16989 LYPLA1-210ENST00000521352 580 ntTSL 525.59■■□□□ 1.694e-8■□□□□ 8.4
YBX3P16989 LYPLA1-206ENST00000519891 559 ntTSL 417.33■□□□□ 0.364e-8■□□□□ 8.4
YBX3P16989 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.12■□□□□ 0.334e-8■□□□□ 8.4
YBX3P16989 LYPLA1-205ENST00000519272 765 ntTSL 311.95□□□□□ -0.54e-8■□□□□ 8.4
YBX3P16989 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)17.11■□□□□ 0.331e-10■□□□□ 8.4
YBX3P16989 NELFCD-207ENST00000479207 1112 ntTSL 316.34■□□□□ 0.211e-10■□□□□ 8.4
YBX3P16989 NELFCD-204ENST00000474543 2047 ntTSL 516.28■□□□□ 0.21e-10■□□□□ 8.4
YBX3P16989 NELFCD-206ENST00000478389 3581 ntTSL 28.5□□□□□ -1.051e-10■□□□□ 8.4
YBX3P16989 NELFCD-212ENST00000497935 666 ntTSL 27.96□□□□□ -1.141e-10■□□□□ 8.4
YBX3P16989 NELFCD-210ENST00000490205 650 ntTSL 26.62□□□□□ -1.351e-10■□□□□ 8.4
YBX3P16989 NCOR2-223ENST00000542565 746 ntTSL 326.74■■□□□ 1.872e-8■□□□□ 8.4
YBX3P16989 HBG2-201ENST00000336906 602 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.263e-77■□□□□ 8.4
YBX3P16989 PSMG4-201ENST00000324987 778 ntTSL 335.97■■■■□ 3.351e-10■□□□□ 8.4
YBX3P16989 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC35.97■■■■□ 3.351e-10■□□□□ 8.4
YBX3P16989 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.32■■■■□ 3.081e-10■□□□□ 8.4
YBX3P16989 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC32.49■■■□□ 2.791e-10■□□□□ 8.4
YBX3P16989 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.661e-10■□□□□ 8.4
YBX3P16989 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.861e-10■□□□□ 8.4
YBX3P16989 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC19.46■□□□□ 0.711e-10■□□□□ 8.4
YBX3P16989 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.94■□□□□ 0.621e-10■□□□□ 8.4
YBX3P16989 PSMG4-210ENST00000509933 2241 ntTSL 216.93■□□□□ 0.31e-10■□□□□ 8.4
YBX3P16989 PSMG4-208ENST00000454610 2323 ntTSL 214.92□□□□□ -0.021e-10■□□□□ 8.4
YBX3P16989 ACSM3-211ENST00000567387 843 ntTSL 37.97□□□□□ -1.131e-6■□□□□ 8.4
YBX3P16989 RPL24-205ENST00000488288 1857 ntTSL 210.74□□□□□ -0.693e-31■□□□□ 8.4
YBX3P16989 COPB1-205ENST00000526527 438 ntTSL 26.48□□□□□ -1.372e-9■□□□□ 8.4
YBX3P16989 FBXO7-205ENST00000444207 747 ntTSL 216.2■□□□□ 0.184e-10■□□□□ 8.4
YBX3P16989 FBXO7-207ENST00000465418 413 ntTSL 56.59□□□□□ -1.354e-10■□□□□ 8.4
Retrieved 100 of 29,075 protein–RNA pairs in 101.2 ms