RNA–Protein interactions for RNA: ENST00000471322.2

HSPG2-208, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 1,602 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-208ENST00000471322 NISCHQ9Y2I1 1504 aa40.7■■■■■ 4.11
HSPG2-208ENST00000471322 CCDC180Q9P1Z9 1646 aa36.01■■■■□ 3.36
HSPG2-208ENST00000471322 ABCC9O60706 1549 aa35.35■■■■□ 3.25
HSPG2-208ENST00000471322 DCAF8L2P0C7V8 631 aa34.22■■■■□ 3.07
HSPG2-208ENST00000471322 ZCCHC6Q5VYS8 1495 aaKnown RBP33.92■■■■□ 3.02
HSPG2-208ENST00000471322 RB1CC1Q8TDY2 1594 aa33.91■■■■□ 3.02
HSPG2-208ENST00000471322 NACADO15069 1562 aa33.87■■■■□ 3.01
HSPG2-208ENST00000471322 MYO15BQ96JP2 1530 aa33.63■■■□□ 2.97
HSPG2-208ENST00000471322 DCAF1Q9Y4B6 1507 aa33.56■■■□□ 2.96
HSPG2-208ENST00000471322 UNC13AQ9UPW8 1703 aa33.17■■■□□ 2.9
HSPG2-208ENST00000471322 PABPN1Q86U42 306 aaKnown RBP eCLIP33.14■■■□□ 2.9
HSPG2-208ENST00000471322 SCRIBQ14160 1630 aa33.07■■■□□ 2.88
HSPG2-208ENST00000471322 BICRAQ9NZM4 1560 aa32.92■■■□□ 2.86
HSPG2-208ENST00000471322 SHROOM4Q9ULL8 1493 aa32.48■■■□□ 2.79
HSPG2-208ENST00000471322 DNAJC5BQ9UF47 199 aa32.38■■■□□ 2.77
HSPG2-208ENST00000471322 EIF4G1Q04637 1599 aaKnown RBP32.04■■■□□ 2.72
HSPG2-208ENST00000471322 CC2D2AQ9P2K1 1620 aa31.9■■■□□ 2.7
HSPG2-208ENST00000471322 CECR2Q9BXF3 1484 aa31.8■■■□□ 2.68
HSPG2-208ENST00000471322 SMARCA4P51532 1647 aa31.56■■■□□ 2.64
HSPG2-208ENST00000471322 BAZ1AQ9NRL2 1556 aaPredicted RBP31.51■■■□□ 2.63
HSPG2-208ENST00000471322 MROH2BQ7Z745 1585 aa31.44■■■□□ 2.62
HSPG2-208ENST00000471322 ATAD2BQ9ULI0 1458 aa31.37■■■□□ 2.61
HSPG2-208ENST00000471322 SMARCA2P51531 1590 aa31.28■■■□□ 2.6
HSPG2-208ENST00000471322 NCAPD3P42695 1498 aa31.28■■■□□ 2.6
HSPG2-208ENST00000471322 PEG3Q9GZU2 1588 aa31.16■■■□□ 2.58
HSPG2-208ENST00000471322 BAZ1BQ9UIG0 1483 aaKnown RBP31.14■■■□□ 2.58
HSPG2-208ENST00000471322 RSF1Q96T23 1441 aaPredicted RBP31.12■■■□□ 2.57
HSPG2-208ENST00000471322 WIZO95785 1651 aa31.11■■■□□ 2.57
HSPG2-208ENST00000471322 HMGXB3Q12766 1538 aa31.11■■■□□ 2.57
HSPG2-208ENST00000471322 SUPT5HO00267 1087 aaKnown RBP30.73■■■□□ 2.51
HSPG2-208ENST00000471322 TOP2AP11388 1531 aaKnown RBP30.71■■■□□ 2.51
HSPG2-208ENST00000471322 NESP48681 1621 aa30.64■■■□□ 2.5
HSPG2-208ENST00000471322 ERCC6Q03468 1493 aa30.43■■■□□ 2.46
HSPG2-208ENST00000471322 CADPSQ9ULU8 1353 aa30.43■■■□□ 2.46
HSPG2-208ENST00000471322 CCDC88BA6NC98 1476 aa30.42■■■□□ 2.46
HSPG2-208ENST00000471322 LAMC3Q9Y6N6 1575 aa30.42■■■□□ 2.46
HSPG2-208ENST00000471322 CFTRP13569 1480 aa30.26■■■□□ 2.43
HSPG2-208ENST00000471322 PDS5BQ9NTI5 1447 aa30.25■■■□□ 2.43
HSPG2-208ENST00000471322 KIF21AQ7Z4S6 1674 aa30.2■■■□□ 2.43
HSPG2-208ENST00000471322 FANCD2Q9BXW9 1451 aa30.11■■■□□ 2.41
HSPG2-208ENST00000471322 CEP164Q9UPV0 1460 aa30.03■■■□□ 2.4
HSPG2-208ENST00000471322 THOC2Q8NI27 1593 aaKnown RBP30.02■■■□□ 2.4
HSPG2-208ENST00000471322 PRDM2Q13029 1718 aa29.94■■■□□ 2.38
HSPG2-208ENST00000471322 MRC2Q9UBG0 1479 aa29.94■■■□□ 2.38
HSPG2-208ENST00000471322 CUX2O14529 1486 aa29.93■■■□□ 2.38
HSPG2-208ENST00000471322 WDR62O43379 1518 aa29.81■■■□□ 2.36
HSPG2-208ENST00000471322 URB2Q14146 1524 aaKnown RBP29.8■■■□□ 2.36
HSPG2-208ENST00000471322 TOPBP1Q92547 1522 aa29.62■■■□□ 2.33
HSPG2-208ENST00000471322 DNMBPQ6XZF7 1577 aa29.55■■■□□ 2.32
HSPG2-208ENST00000471322 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
HSPG2-208ENST00000471322 CHIC1Q5VXU3 224 aa29.52■■■□□ 2.32
HSPG2-208ENST00000471322 CUX1P39880 1505 aa29.47■■■□□ 2.31
HSPG2-208ENST00000471322 POLA1P09884 1462 aaPredicted RBP29.39■■■□□ 2.3
HSPG2-208ENST00000471322 IFT140Q96RY7 1462 aa29.37■■■□□ 2.29
HSPG2-208ENST00000471322 FGD5Q6ZNL6 1462 aa29.35■■■□□ 2.29
HSPG2-208ENST00000471322 RAD54L2Q9Y4B4 1467 aa29.33■■■□□ 2.29
HSPG2-208ENST00000471322 WRNQ14191 1432 aaPredicted RBP eCLIP29.33■■■□□ 2.29
HSPG2-208ENST00000471322 ZNF608Q9ULD9 1512 aaPredicted RBP29.33■■■□□ 2.29
HSPG2-208ENST00000471322 SOGA1O94964 1423 aa29.3■■■□□ 2.28
HSPG2-208ENST00000471322 SYNJ1O43426 1573 aa29.26■■■□□ 2.27
HSPG2-208ENST00000471322 TARBP1Q13395 1621 aaKnown RBP29.26■■■□□ 2.27
HSPG2-208ENST00000471322 TOP2BQ02880 1626 aa29.19■■■□□ 2.26
HSPG2-208ENST00000471322 AQRO60306 1485 aaKnown RBP eCLIP29.19■■■□□ 2.265e-12■■■■■ 57.4
HSPG2-208ENST00000471322 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
HSPG2-208ENST00000471322 BIVM-ERCC5R4GMW8 1640 aa29.17■■■□□ 2.26
HSPG2-208ENST00000471322 EIF4G3O43432 1585 aaKnown RBP29.15■■■□□ 2.26
HSPG2-208ENST00000471322 ABCA10Q8WWZ4 1543 aa29.01■■■□□ 2.24
HSPG2-208ENST00000471322 WDR97A6NE52 1622 aa29.01■■■□□ 2.24
HSPG2-208ENST00000471322 TRIM41Q8WV44 630 aa28.97■■■□□ 2.23
HSPG2-208ENST00000471322 DNAJC5Q9H3Z4 198 aa28.96■■■□□ 2.23
HSPG2-208ENST00000471322 GAPVD1Q14C86 1478 aa28.94■■■□□ 2.22
HSPG2-208ENST00000471322 FBLN2P98095 1184 aa28.91■■■□□ 2.22
HSPG2-208ENST00000471322 GRIN2BQ13224 1484 aa28.89■■■□□ 2.21
HSPG2-208ENST00000471322 SNAPC4Q5SXM2 1469 aa28.89■■■□□ 2.21
HSPG2-208ENST00000471322 ABCA5Q8WWZ7 1642 aa28.89■■■□□ 2.21
HSPG2-208ENST00000471322 OSCARQ8IYS5 282 aa28.83■■■□□ 2.21
HSPG2-208ENST00000471322 PBRM1Q86U86 1689 aa28.82■■■□□ 2.2
HSPG2-208ENST00000471322 MAGI1Q96QZ7 1491 aaPredicted RBP28.76■■■□□ 2.2
HSPG2-208ENST00000471322 CHMP7Q8WUX9 453 aaPredicted RBP28.76■■■□□ 2.19
HSPG2-208ENST00000471322 CHD1O14646 1710 aa28.75■■■□□ 2.19
HSPG2-208ENST00000471322 KIF27Q86VH2 1401 aa28.68■■■□□ 2.18
HSPG2-208ENST00000471322 SYNJ2O15056 1496 aa28.68■■■□□ 2.18
HSPG2-208ENST00000471322 ERICH3Q5RHP9 1530 aa28.65■■■□□ 2.18
HSPG2-208ENST00000471322 ADAMTS12P58397 1594 aa28.61■■■□□ 2.17
HSPG2-208ENST00000471322 IGF1RP08069 1367 aa28.59■■■□□ 2.17
HSPG2-208ENST00000471322 RUSC2Q8N2Y8 1516 aa28.58■■■□□ 2.17
HSPG2-208ENST00000471322 FHAD1B1AJZ9 1412 aa28.58■■■□□ 2.17
HSPG2-208ENST00000471322 GRIN2AQ12879 1464 aa28.53■■■□□ 2.16
HSPG2-208ENST00000471322 CARMIL1Q5VZK9 1371 aa28.43■■■□□ 2.14
HSPG2-208ENST00000471322 CEP170Q5SW79 1584 aa28.4■■■□□ 2.14
HSPG2-208ENST00000471322 CLASP1Q7Z460 1538 aa28.4■■■□□ 2.14
HSPG2-208ENST00000471322 CUL7Q14999 1698 aa28.4■■■□□ 2.14
HSPG2-208ENST00000471322 NUP160Q12769 1436 aa28.37■■■□□ 2.13
HSPG2-208ENST00000471322 LOC105371045A0A1W2PR82 267 aa28.35■■■□□ 2.13
HSPG2-208ENST00000471322 FAM9AQ8IZU1 332 aaPredicted RBP28.34■■■□□ 2.13
HSPG2-208ENST00000471322 ARHGEF11O15085 1522 aa28.34■■■□□ 2.13
HSPG2-208ENST00000471322 RIMBP3CA6NJZ7 1639 aa28.32■■■□□ 2.12
HSPG2-208ENST00000471322 RIMBP3BA6NNM3 1639 aa28.32■■■□□ 2.12
HSPG2-208ENST00000471322 RIMBP3Q9UFD9 1639 aa28.32■■■□□ 2.12
HSPG2-208ENST00000471322 EEA1Q15075 1411 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms