RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 NISCHQ9Y2I1 1504 aa48.31■■■■■ 5.32
SND1-214ENST00000489417 CCDC180Q9P1Z9 1646 aa42.38■■■■■ 4.38
SND1-214ENST00000489417 ZCCHC6Q5VYS8 1495 aaKnown RBP40.52■■■■■ 4.08
SND1-214ENST00000489417 ABCC9O60706 1549 aa40.37■■■■■ 4.05
SND1-214ENST00000489417 DCAF1Q9Y4B6 1507 aa40■■■■□ 3.99
SND1-214ENST00000489417 DCAF8L2P0C7V8 631 aa39.92■■■■□ 3.98
SND1-214ENST00000489417 MYO15BQ96JP2 1530 aa39.69■■■■□ 3.94
SND1-214ENST00000489417 NACADO15069 1562 aa39.55■■■■□ 3.92
SND1-214ENST00000489417 RB1CC1Q8TDY2 1594 aa39.32■■■■□ 3.88
SND1-214ENST00000489417 SHROOM4Q9ULL8 1493 aa39.02■■■■□ 3.84
SND1-214ENST00000489417 SCRIBQ14160 1630 aa38.85■■■■□ 3.81
SND1-214ENST00000489417 UNC13AQ9UPW8 1703 aa38.44■■■■□ 3.74
SND1-214ENST00000489417 BICRAQ9NZM4 1560 aa38.1■■■■□ 3.69
SND1-214ENST00000489417 PABPN1Q86U42 306 aaKnown RBP eCLIP37.94■■■■□ 3.66
SND1-214ENST00000489417 CECR2Q9BXF3 1484 aa37.53■■■■□ 3.6
SND1-214ENST00000489417 BAZ1AQ9NRL2 1556 aaPredicted RBP37.36■■■■□ 3.57
SND1-214ENST00000489417 SUPT5HO00267 1087 aaKnown RBP37.32■■■■□ 3.56
SND1-214ENST00000489417 RSF1Q96T23 1441 aaPredicted RBP37.29■■■■□ 3.56
SND1-214ENST00000489417 MROH2BQ7Z745 1585 aa37.29■■■■□ 3.56
SND1-214ENST00000489417 SMARCA4P51532 1647 aa37.24■■■■□ 3.55
SND1-214ENST00000489417 EIF4G1Q04637 1599 aaKnown RBP36.99■■■■□ 3.51
SND1-214ENST00000489417 WIZO95785 1651 aa36.95■■■■□ 3.51
SND1-214ENST00000489417 PEG3Q9GZU2 1588 aa36.82■■■■□ 3.48
SND1-214ENST00000489417 ATAD2BQ9ULI0 1458 aa36.72■■■■□ 3.47
SND1-214ENST00000489417 SMARCA2P51531 1590 aa36.72■■■■□ 3.47
SND1-214ENST00000489417 TOP2AP11388 1531 aaKnown RBP36.62■■■■□ 3.45
SND1-214ENST00000489417 CC2D2AQ9P2K1 1620 aa36.54■■■■□ 3.44
SND1-214ENST00000489417 BAZ1BQ9UIG0 1483 aaKnown RBP36.5■■■■□ 3.43
SND1-214ENST00000489417 NCAPD3P42695 1498 aa36.49■■■■□ 3.43
SND1-214ENST00000489417 HMGXB3Q12766 1538 aa36.43■■■■□ 3.42
SND1-214ENST00000489417 CCDC88BA6NC98 1476 aa36.19■■■■□ 3.38
SND1-214ENST00000489417 DNAJC5BQ9UF47 199 aa35.92■■■■□ 3.34
SND1-214ENST00000489417 CFTRP13569 1480 aa35.55■■■■□ 3.28
SND1-214ENST00000489417 CHIC1Q5VXU3 224 aa35.54■■■■□ 3.28
SND1-214ENST00000489417 CADPSQ9ULU8 1353 aa35.51■■■■□ 3.28
SND1-214ENST00000489417 PRDM2Q13029 1718 aa35.37■■■■□ 3.25
SND1-214ENST00000489417 LAMC3Q9Y6N6 1575 aa35.33■■■■□ 3.25
SND1-214ENST00000489417 NESP48681 1621 aa35.3■■■■□ 3.24
SND1-214ENST00000489417 ABCC8Q09428 1581 aa35.27■■■■□ 3.24
SND1-214ENST00000489417 TRIM41Q8WV44 630 aa35.16■■■■□ 3.22
SND1-214ENST00000489417 WRNQ14191 1432 aaPredicted RBP eCLIP35.13■■■■□ 3.21
SND1-214ENST00000489417 FANCD2Q9BXW9 1451 aa35.12■■■■□ 3.21
SND1-214ENST00000489417 PDS5BQ9NTI5 1447 aa35.06■■■■□ 3.2
SND1-214ENST00000489417 SYNJ1O43426 1573 aa35■■■■□ 3.19
SND1-214ENST00000489417 CEP164Q9UPV0 1460 aa34.96■■■■□ 3.19
SND1-214ENST00000489417 TOP2BQ02880 1626 aa34.9■■■■□ 3.18
SND1-214ENST00000489417 CUX1P39880 1505 aa34.9■■■■□ 3.18
SND1-214ENST00000489417 BIVM-ERCC5R4GMW8 1640 aa34.9■■■■□ 3.18
SND1-214ENST00000489417 KIF21AQ7Z4S6 1674 aa34.89■■■■□ 3.18
SND1-214ENST00000489417 DNMBPQ6XZF7 1577 aa34.75■■■■□ 3.15
SND1-214ENST00000489417 URB2Q14146 1524 aaKnown RBP34.7■■■■□ 3.15
SND1-214ENST00000489417 TOPBP1Q92547 1522 aa34.7■■■■□ 3.14
SND1-214ENST00000489417 ERCC6Q03468 1493 aa34.68■■■■□ 3.14
SND1-214ENST00000489417 MRC2Q9UBG0 1479 aa34.65■■■■□ 3.14
SND1-214ENST00000489417 FGD5Q6ZNL6 1462 aa34.59■■■■□ 3.13
SND1-214ENST00000489417 SOGA1O94964 1423 aa34.51■■■■□ 3.12
SND1-214ENST00000489417 POLA1P09884 1462 aaPredicted RBP34.48■■■■□ 3.11
SND1-214ENST00000489417 WDR62O43379 1518 aa34.48■■■■□ 3.11
SND1-214ENST00000489417 THOC2Q8NI27 1593 aaKnown RBP34.47■■■■□ 3.11
SND1-214ENST00000489417 FAM9AQ8IZU1 332 aaPredicted RBP34.47■■■■□ 3.11
SND1-214ENST00000489417 EEA1Q15075 1411 aa34.45■■■■□ 3.11
SND1-214ENST00000489417 RUSC2Q8N2Y8 1516 aa34.4■■■■□ 3.1
SND1-214ENST00000489417 RAD54L2Q9Y4B4 1467 aa34.35■■■■□ 3.09
SND1-214ENST00000489417 ABCA10Q8WWZ4 1543 aa34.3■■■■□ 3.08
SND1-214ENST00000489417 KIF27Q86VH2 1401 aa34.29■■■■□ 3.08
SND1-214ENST00000489417 CUX2O14529 1486 aa34.29■■■■□ 3.08
SND1-214ENST00000489417 CSRNP3Q8WYN3 585 aa34.23■■■■□ 3.07
SND1-214ENST00000489417 WDR97A6NE52 1622 aa34.23■■■■□ 3.07
SND1-214ENST00000489417 TARBP1Q13395 1621 aaKnown RBP34.21■■■■□ 3.07
SND1-214ENST00000489417 IFT140Q96RY7 1462 aa34.16■■■■□ 3.06
SND1-214ENST00000489417 LOC105371045A0A1W2PR82 267 aa34.12■■■■□ 3.05
SND1-214ENST00000489417 ABCA5Q8WWZ7 1642 aa34.06■■■■□ 3.04
SND1-214ENST00000489417 TDRD9Q8NDG6 1382 aaKnown RBP34.03■■■■□ 3.04
SND1-214ENST00000489417 KIF21BO75037 1637 aa34.01■■■■□ 3.03
SND1-214ENST00000489417 IGF1RP08069 1367 aa34■■■■□ 3.03
SND1-214ENST00000489417 GAPVD1Q14C86 1478 aa33.99■■■■□ 3.03
SND1-214ENST00000489417 EHMT2Q96KQ7 1210 aa33.96■■■■□ 3.03
SND1-214ENST00000489417 PRXQ9BXM0 1461 aa33.95■■■■□ 3.02
SND1-214ENST00000489417 ZNF608Q9ULD9 1512 aaPredicted RBP33.93■■■■□ 3.02
SND1-214ENST00000489417 GOLGA3Q08378 1498 aa33.92■■■■□ 3.02
SND1-214ENST00000489417 AQRO60306 1485 aaKnown RBP eCLIP33.9■■■■□ 3.02
SND1-214ENST00000489417 ERICH3Q5RHP9 1530 aa33.89■■■■□ 3.02
SND1-214ENST00000489417 EIF4G3O43432 1585 aaKnown RBP33.85■■■■□ 3.01
SND1-214ENST00000489417 RAPGEF2Q9Y4G8 1499 aa33.84■■■■□ 3.01
SND1-214ENST00000489417 PBRM1Q86U86 1689 aa33.84■■■■□ 3.01
SND1-214ENST00000489417 CUL7Q14999 1698 aa33.84■■■■□ 3.01
SND1-214ENST00000489417 CARMIL1Q5VZK9 1371 aa33.83■■■■□ 3.01
SND1-214ENST00000489417 GRIN2BQ13224 1484 aa33.81■■■■□ 3
SND1-214ENST00000489417 UBTFP17480 764 aaKnown RBP33.73■■■□□ 2.99
SND1-214ENST00000489417 TNIKQ9UKE5 1360 aa33.73■■■□□ 2.99
SND1-214ENST00000489417 ADAMTS12P58397 1594 aa33.66■■■□□ 2.98
SND1-214ENST00000489417 FHAD1B1AJZ9 1412 aa33.63■■■□□ 2.97
SND1-214ENST00000489417 SNAPC4Q5SXM2 1469 aa33.62■■■□□ 2.97
SND1-214ENST00000489417 MAGI1Q96QZ7 1491 aaPredicted RBP33.57■■■□□ 2.97
SND1-214ENST00000489417 CEP162Q5TB80 1403 aa33.5■■■□□ 2.95
SND1-214ENST00000489417 SYNJ2O15056 1496 aa33.43■■■□□ 2.94
SND1-214ENST00000489417 GRIN2AQ12879 1464 aa33.39■■■□□ 2.94
SND1-214ENST00000489417 CTTNBP2Q8WZ74 1663 aa33.38■■■□□ 2.93
SND1-214ENST00000489417 CLIP1P30622 1438 aa33.35■■■□□ 2.93
SND1-214ENST00000489417 CHMP7Q8WUX9 453 aaPredicted RBP33.34■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms