RNA–Protein interactions for RNA: ENST00000485871.1

SND1-212, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-212ENST00000485871 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.85
SND1-212ENST00000485871 CCDC180Q9P1Z9 1646 aa23.48■■□□□ 1.35
SND1-212ENST00000485871 ABCC9O60706 1549 aa22.86■■□□□ 1.25
SND1-212ENST00000485871 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
SND1-212ENST00000485871 DCAF1Q9Y4B6 1507 aa22.09■■□□□ 1.13
SND1-212ENST00000485871 MYO15BQ96JP2 1530 aa21.96■■□□□ 1.11
SND1-212ENST00000485871 DNAJC5BQ9UF47 199 aa21.95■■□□□ 1.1
SND1-212ENST00000485871 NACADO15069 1562 aa21.87■■□□□ 1.09
SND1-212ENST00000485871 DCAF8L2P0C7V8 631 aa21.81■■□□□ 1.08
SND1-212ENST00000485871 RB1CC1Q8TDY2 1594 aa21.74■■□□□ 1.07
SND1-212ENST00000485871 UNC13AQ9UPW8 1703 aa21.41■■□□□ 1.02
SND1-212ENST00000485871 SCRIBQ14160 1630 aa21.41■■□□□ 1.02
SND1-212ENST00000485871 SHROOM4Q9ULL8 1493 aa21.31■■□□□ 1
SND1-212ENST00000485871 PABPN1Q86U42 306 aaKnown RBP eCLIP21.27■■□□□ 1
SND1-212ENST00000485871 BICRAQ9NZM4 1560 aa21.16■□□□□ 0.98
SND1-212ENST00000485871 CECR2Q9BXF3 1484 aa20.69■□□□□ 0.9
SND1-212ENST00000485871 DNAJC5Q9H3Z4 198 aa20.59■□□□□ 0.89
SND1-212ENST00000485871 BAZ1AQ9NRL2 1556 aaPredicted RBP20.59■□□□□ 0.89
SND1-212ENST00000485871 SMARCA4P51532 1647 aa20.57■□□□□ 0.88
SND1-212ENST00000485871 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
SND1-212ENST00000485871 MROH2BQ7Z745 1585 aa20.55■□□□□ 0.88
SND1-212ENST00000485871 RSF1Q96T23 1441 aaPredicted RBP20.5■□□□□ 0.87
SND1-212ENST00000485871 EIF4G1Q04637 1599 aaKnown RBP20.49■□□□□ 0.87
SND1-212ENST00000485871 WIZO95785 1651 aa20.38■□□□□ 0.85
SND1-212ENST00000485871 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
SND1-212ENST00000485871 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
SND1-212ENST00000485871 ATAD2BQ9ULI0 1458 aa20.27■□□□□ 0.84
SND1-212ENST00000485871 SMARCA2P51531 1590 aa20.26■□□□□ 0.83
SND1-212ENST00000485871 NCAPD3P42695 1498 aa20.17■□□□□ 0.82
SND1-212ENST00000485871 TOP2AP11388 1531 aaKnown RBP20.17■□□□□ 0.82
SND1-212ENST00000485871 HMGXB3Q12766 1538 aa20.15■□□□□ 0.82
SND1-212ENST00000485871 BAZ1BQ9UIG0 1483 aaKnown RBP20.1■□□□□ 0.81
SND1-212ENST00000485871 CCDC88BA6NC98 1476 aa19.91■□□□□ 0.78
SND1-212ENST00000485871 CUX2O14529 1486 aa19.9■□□□□ 0.78
SND1-212ENST00000485871 ERCC6Q03468 1493 aa19.81■□□□□ 0.76
SND1-212ENST00000485871 PRDM2Q13029 1718 aa19.63■□□□□ 0.73
SND1-212ENST00000485871 CFTRP13569 1480 aa19.62■□□□□ 0.73
SND1-212ENST00000485871 CADPSQ9ULU8 1353 aa19.57■□□□□ 0.72
SND1-212ENST00000485871 LAMC3Q9Y6N6 1575 aa19.56■□□□□ 0.72
SND1-212ENST00000485871 TRIM41Q8WV44 630 aa19.54■□□□□ 0.72
SND1-212ENST00000485871 NESP48681 1621 aa19.52■□□□□ 0.72
SND1-212ENST00000485871 ABCC8Q09428 1581 aa19.39■□□□□ 0.69
SND1-212ENST00000485871 KIF21AQ7Z4S6 1674 aa19.36■□□□□ 0.69
SND1-212ENST00000485871 FANCD2Q9BXW9 1451 aa19.36■□□□□ 0.69
SND1-212ENST00000485871 CHIC1Q5VXU3 224 aa19.35■□□□□ 0.69
SND1-212ENST00000485871 PDS5BQ9NTI5 1447 aa19.32■□□□□ 0.68
SND1-212ENST00000485871 SYNJ1O43426 1573 aa19.28■□□□□ 0.68
SND1-212ENST00000485871 THOC2Q8NI27 1593 aaKnown RBP19.28■□□□□ 0.68
SND1-212ENST00000485871 WRNQ14191 1432 aaPredicted RBP eCLIP19.28■□□□□ 0.68
SND1-212ENST00000485871 CEP164Q9UPV0 1460 aa19.28■□□□□ 0.68
SND1-212ENST00000485871 BIVM-ERCC5R4GMW8 1640 aa19.27■□□□□ 0.68
SND1-212ENST00000485871 CUX1P39880 1505 aa19.25■□□□□ 0.67
SND1-212ENST00000485871 TOP2BQ02880 1626 aa19.24■□□□□ 0.67
SND1-212ENST00000485871 DNMBPQ6XZF7 1577 aa19.19■□□□□ 0.66
SND1-212ENST00000485871 URB2Q14146 1524 aaKnown RBP19.18■□□□□ 0.66
SND1-212ENST00000485871 TOPBP1Q92547 1522 aa19.15■□□□□ 0.66
SND1-212ENST00000485871 MRC2Q9UBG0 1479 aa19.14■□□□□ 0.65
SND1-212ENST00000485871 WDR62O43379 1518 aa19.1■□□□□ 0.65
SND1-212ENST00000485871 FGD5Q6ZNL6 1462 aa19.06■□□□□ 0.64
SND1-212ENST00000485871 POLA1P09884 1462 aaPredicted RBP19.02■□□□□ 0.63
SND1-212ENST00000485871 OSCARQ8IYS5 282 aa19.01■□□□□ 0.63
SND1-212ENST00000485871 WDR97A6NE52 1622 aa18.99■□□□□ 0.63
SND1-212ENST00000485871 TARBP1Q13395 1621 aaKnown RBP18.95■□□□□ 0.62
SND1-212ENST00000485871 RAD54L2Q9Y4B4 1467 aa18.92■□□□□ 0.62
SND1-212ENST00000485871 SOGA1O94964 1423 aa18.91■□□□□ 0.62
SND1-212ENST00000485871 ABCA10Q8WWZ4 1543 aa18.9■□□□□ 0.62
SND1-212ENST00000485871 RUSC2Q8N2Y8 1516 aa18.9■□□□□ 0.62
SND1-212ENST00000485871 IFT140Q96RY7 1462 aa18.84■□□□□ 0.61
SND1-212ENST00000485871 EEA1Q15075 1411 aa18.84■□□□□ 0.61
SND1-212ENST00000485871 ABCA5Q8WWZ7 1642 aa18.83■□□□□ 0.61
SND1-212ENST00000485871 KIF27Q86VH2 1401 aa18.8■□□□□ 0.6
SND1-212ENST00000485871 ZNF608Q9ULD9 1512 aaPredicted RBP18.74■□□□□ 0.59
SND1-212ENST00000485871 PBRM1Q86U86 1689 aa18.73■□□□□ 0.59
SND1-212ENST00000485871 EIF4G3O43432 1585 aaKnown RBP18.73■□□□□ 0.59
SND1-212ENST00000485871 FAM9AQ8IZU1 332 aaPredicted RBP18.72■□□□□ 0.59
SND1-212ENST00000485871 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
SND1-212ENST00000485871 TDRD9Q8NDG6 1382 aaKnown RBP18.71■□□□□ 0.59
SND1-212ENST00000485871 CSRNP3Q8WYN3 585 aa18.69■□□□□ 0.58
SND1-212ENST00000485871 KIF21BO75037 1637 aa18.69■□□□□ 0.58
SND1-212ENST00000485871 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
SND1-212ENST00000485871 RIMBP3CA6NJZ7 1639 aa18.68■□□□□ 0.58
SND1-212ENST00000485871 RIMBP3BA6NNM3 1639 aa18.68■□□□□ 0.58
SND1-212ENST00000485871 RIMBP3Q9UFD9 1639 aa18.68■□□□□ 0.58
SND1-212ENST00000485871 IGF1RP08069 1367 aa18.68■□□□□ 0.58
SND1-212ENST00000485871 AQRO60306 1485 aaKnown RBP eCLIP18.67■□□□□ 0.58
SND1-212ENST00000485871 PRXQ9BXM0 1461 aa18.66■□□□□ 0.58
SND1-212ENST00000485871 CUL7Q14999 1698 aa18.66■□□□□ 0.58
SND1-212ENST00000485871 TRHP20396 242 aaPredicted RBP18.64■□□□□ 0.57
SND1-212ENST00000485871 CYB5RLQ6IPT4 315 aa18.62■□□□□ 0.57
SND1-212ENST00000485871 GRIN2BQ13224 1484 aa18.62■□□□□ 0.57
SND1-212ENST00000485871 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
SND1-212ENST00000485871 ARHGEF11O15085 1522 aa18.59■□□□□ 0.57
SND1-212ENST00000485871 RAPGEF2Q9Y4G8 1499 aa18.57■□□□□ 0.56
SND1-212ENST00000485871 GOLGA3Q08378 1498 aa18.56■□□□□ 0.56
SND1-212ENST00000485871 CARMIL1Q5VZK9 1371 aa18.55■□□□□ 0.56
SND1-212ENST00000485871 SNAPC4Q5SXM2 1469 aa18.54■□□□□ 0.56
SND1-212ENST00000485871 MAGI1Q96QZ7 1491 aaPredicted RBP18.53■□□□□ 0.56
SND1-212ENST00000485871 LOC105371045A0A1W2PR82 267 aa18.53■□□□□ 0.56
SND1-212ENST00000485871 AEBP2Q6ZN18 517 aaPredicted RBP18.53■□□□□ 0.56
SND1-212ENST00000485871 FHAD1B1AJZ9 1412 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms