RNA–Protein interactions for RNA: ENST00000477741.5

NELFCD-205, Transcript of negative elongation factor complex member C/D, humanhuman

TSL 1 (best)

Gene NELFCD, Length 2,070 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFCD-205ENST00000477741 NISCHQ9Y2I1 1504 aa33.14■■■□□ 2.9
NELFCD-205ENST00000477741 CCDC180Q9P1Z9 1646 aa28.9■■■□□ 2.22
NELFCD-205ENST00000477741 ABCC9O60706 1549 aa27.86■■■□□ 2.05
NELFCD-205ENST00000477741 ZCCHC6Q5VYS8 1495 aaKnown RBP27.77■■■□□ 2.04
NELFCD-205ENST00000477741 DCAF8L2P0C7V8 631 aa27.65■■■□□ 2.02
NELFCD-205ENST00000477741 DCAF1Q9Y4B6 1507 aa27.29■■□□□ 1.96
NELFCD-205ENST00000477741 MYO15BQ96JP2 1530 aa27.07■■□□□ 1.92
NELFCD-205ENST00000477741 NACADO15069 1562 aa27.05■■□□□ 1.92
NELFCD-205ENST00000477741 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
NELFCD-205ENST00000477741 RB1CC1Q8TDY2 1594 aa26.91■■□□□ 1.9
NELFCD-205ENST00000477741 SCRIBQ14160 1630 aa26.71■■□□□ 1.87
NELFCD-205ENST00000477741 UNC13AQ9UPW8 1703 aa26.37■■□□□ 1.81
NELFCD-205ENST00000477741 PABPN1Q86U42 306 aaKnown RBP eCLIP26.29■■□□□ 1.88e-7■■□□□ 12.1
NELFCD-205ENST00000477741 BICRAQ9NZM4 1560 aa26.19■■□□□ 1.78
NELFCD-205ENST00000477741 CECR2Q9BXF3 1484 aa25.89■■□□□ 1.73
NELFCD-205ENST00000477741 SUPT5HO00267 1087 aaKnown RBP25.79■■□□□ 1.72
NELFCD-205ENST00000477741 MROH2BQ7Z745 1585 aa25.66■■□□□ 1.7
NELFCD-205ENST00000477741 RSF1Q96T23 1441 aaPredicted RBP25.64■■□□□ 1.7
NELFCD-205ENST00000477741 BAZ1AQ9NRL2 1556 aaPredicted RBP25.57■■□□□ 1.68
NELFCD-205ENST00000477741 SMARCA4P51532 1647 aa25.52■■□□□ 1.68
NELFCD-205ENST00000477741 EIF4G1Q04637 1599 aaKnown RBP25.41■■□□□ 1.66
NELFCD-205ENST00000477741 WIZO95785 1651 aa25.41■■□□□ 1.66
NELFCD-205ENST00000477741 ATAD2BQ9ULI0 1458 aa25.23■■□□□ 1.63
NELFCD-205ENST00000477741 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
NELFCD-205ENST00000477741 CC2D2AQ9P2K1 1620 aa25.13■■□□□ 1.61
NELFCD-205ENST00000477741 SMARCA2P51531 1590 aa25.11■■□□□ 1.61
NELFCD-205ENST00000477741 TOP2AP11388 1531 aaKnown RBP25.06■■□□□ 1.6
NELFCD-205ENST00000477741 BAZ1BQ9UIG0 1483 aaKnown RBP25.04■■□□□ 1.6
NELFCD-205ENST00000477741 NCAPD3P42695 1498 aa25.03■■□□□ 1.6
NELFCD-205ENST00000477741 DNAJC5BQ9UF47 199 aa24.98■■□□□ 1.59
NELFCD-205ENST00000477741 HMGXB3Q12766 1538 aa24.92■■□□□ 1.58
NELFCD-205ENST00000477741 CCDC88BA6NC98 1476 aa24.88■■□□□ 1.57
NELFCD-205ENST00000477741 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
NELFCD-205ENST00000477741 CFTRP13569 1480 aa24.41■■□□□ 1.5
NELFCD-205ENST00000477741 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
NELFCD-205ENST00000477741 NESP48681 1621 aa24.38■■□□□ 1.49
NELFCD-205ENST00000477741 ABCC8Q09428 1581 aa24.3■■□□□ 1.48
NELFCD-205ENST00000477741 TRIM41Q8WV44 630 aa24.19■■□□□ 1.46
NELFCD-205ENST00000477741 LAMC3Q9Y6N6 1575 aa24.17■■□□□ 1.46
NELFCD-205ENST00000477741 FANCD2Q9BXW9 1451 aa24.13■■□□□ 1.45
NELFCD-205ENST00000477741 WRNQ14191 1432 aaPredicted RBP eCLIP24.11■■□□□ 1.45
NELFCD-205ENST00000477741 PRDM2Q13029 1718 aa24.09■■□□□ 1.45
NELFCD-205ENST00000477741 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
NELFCD-205ENST00000477741 PDS5BQ9NTI5 1447 aa24.04■■□□□ 1.44
NELFCD-205ENST00000477741 CUX1P39880 1505 aa23.99■■□□□ 1.43
NELFCD-205ENST00000477741 CEP164Q9UPV0 1460 aa23.98■■□□□ 1.43
NELFCD-205ENST00000477741 KIF21AQ7Z4S6 1674 aa23.97■■□□□ 1.43
NELFCD-205ENST00000477741 TOP2BQ02880 1626 aa23.9■■□□□ 1.42
NELFCD-205ENST00000477741 URB2Q14146 1524 aaKnown RBP23.87■■□□□ 1.41
NELFCD-205ENST00000477741 FAM9AQ8IZU1 332 aaPredicted RBP23.86■■□□□ 1.41
NELFCD-205ENST00000477741 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
NELFCD-205ENST00000477741 BIVM-ERCC5R4GMW8 1640 aa23.85■■□□□ 1.41
NELFCD-205ENST00000477741 TOPBP1Q92547 1522 aa23.83■■□□□ 1.41
NELFCD-205ENST00000477741 SOGA1O94964 1423 aa23.8■■□□□ 1.4
NELFCD-205ENST00000477741 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
NELFCD-205ENST00000477741 FGD5Q6ZNL6 1462 aa23.77■■□□□ 1.4
NELFCD-205ENST00000477741 MRC2Q9UBG0 1479 aa23.76■■□□□ 1.39
NELFCD-205ENST00000477741 RUSC2Q8N2Y8 1516 aa23.75■■□□□ 1.39
NELFCD-205ENST00000477741 POLA1P09884 1462 aaPredicted RBP23.72■■□□□ 1.39
NELFCD-205ENST00000477741 RAD54L2Q9Y4B4 1467 aa23.69■■□□□ 1.38
NELFCD-205ENST00000477741 THOC2Q8NI27 1593 aaKnown RBP23.66■■□□□ 1.38
NELFCD-205ENST00000477741 WDR62O43379 1518 aa23.64■■□□□ 1.38
NELFCD-205ENST00000477741 EHMT2Q96KQ7 1210 aa23.63■■□□□ 1.37
NELFCD-205ENST00000477741 LOC105371045A0A1W2PR82 267 aa23.61■■□□□ 1.37
NELFCD-205ENST00000477741 CUX2O14529 1486 aa23.57■■□□□ 1.36
NELFCD-205ENST00000477741 CSRNP3Q8WYN3 585 aa23.52■■□□□ 1.36
NELFCD-205ENST00000477741 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
NELFCD-205ENST00000477741 KIF27Q86VH2 1401 aa23.5■■□□□ 1.35
NELFCD-205ENST00000477741 TDRD9Q8NDG6 1382 aaKnown RBP23.5■■□□□ 1.35
NELFCD-205ENST00000477741 EEA1Q15075 1411 aa23.48■■□□□ 1.35
NELFCD-205ENST00000477741 TARBP1Q13395 1621 aaKnown RBP23.47■■□□□ 1.35
NELFCD-205ENST00000477741 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
NELFCD-205ENST00000477741 ZNF608Q9ULD9 1512 aaPredicted RBP23.42■■□□□ 1.34
NELFCD-205ENST00000477741 IFT140Q96RY7 1462 aa23.41■■□□□ 1.34
NELFCD-205ENST00000477741 AQRO60306 1485 aaKnown RBP eCLIP23.4■■□□□ 1.342e-7■■■■□ 23.9
NELFCD-205ENST00000477741 IGF1RP08069 1367 aa23.39■■□□□ 1.34
NELFCD-205ENST00000477741 GAPVD1Q14C86 1478 aa23.34■■□□□ 1.33
NELFCD-205ENST00000477741 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.33
NELFCD-205ENST00000477741 RAPGEF2Q9Y4G8 1499 aa23.3■■□□□ 1.32
NELFCD-205ENST00000477741 PRXQ9BXM0 1461 aa23.29■■□□□ 1.32
NELFCD-205ENST00000477741 CARMIL1Q5VZK9 1371 aa23.25■■□□□ 1.31
NELFCD-205ENST00000477741 EIF4G3O43432 1585 aaKnown RBP23.23■■□□□ 1.31
NELFCD-205ENST00000477741 KIF21BO75037 1637 aa23.23■■□□□ 1.31
NELFCD-205ENST00000477741 UBTFP17480 764 aaKnown RBP23.23■■□□□ 1.31
NELFCD-205ENST00000477741 GOLGA3Q08378 1498 aa23.22■■□□□ 1.31
NELFCD-205ENST00000477741 ERICH3Q5RHP9 1530 aa23.19■■□□□ 1.3
NELFCD-205ENST00000477741 GRIN2BQ13224 1484 aa23.18■■□□□ 1.3
NELFCD-205ENST00000477741 PBRM1Q86U86 1689 aa23.16■■□□□ 1.3
NELFCD-205ENST00000477741 SNAPC4Q5SXM2 1469 aa23.12■■□□□ 1.29
NELFCD-205ENST00000477741 TNIKQ9UKE5 1360 aa23.1■■□□□ 1.29
NELFCD-205ENST00000477741 CUL7Q14999 1698 aa23.09■■□□□ 1.29
NELFCD-205ENST00000477741 RANGAP1P46060 587 aaPredicted RBP23.08■■□□□ 1.29
NELFCD-205ENST00000477741 FHAD1B1AJZ9 1412 aa23.06■■□□□ 1.28
NELFCD-205ENST00000477741 ADAMTS12P58397 1594 aa23.06■■□□□ 1.28
NELFCD-205ENST00000477741 FBLN2P98095 1184 aa23.01■■□□□ 1.27
NELFCD-205ENST00000477741 CEP162Q5TB80 1403 aa23■■□□□ 1.27
NELFCD-205ENST00000477741 MAGI1Q96QZ7 1491 aaPredicted RBP22.99■■□□□ 1.27
NELFCD-205ENST00000477741 CHMP7Q8WUX9 453 aaPredicted RBP22.96■■□□□ 1.27
NELFCD-205ENST00000477741 SYNJ2O15056 1496 aa22.94■■□□□ 1.26
NELFCD-205ENST00000477741 GRIN2AQ12879 1464 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms