RNA–Protein interactions for RNA: ENST00000474543.5

NELFCD-204, Transcript of negative elongation factor complex member C/D, humanhuman

TSL 5

Gene NELFCD, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFCD-204ENST00000474543 NISCHQ9Y2I1 1504 aa30.82■■■□□ 2.52
NELFCD-204ENST00000474543 CCDC180Q9P1Z9 1646 aa27.28■■□□□ 1.96
NELFCD-204ENST00000474543 ABCC9O60706 1549 aa26.57■■□□□ 1.84
NELFCD-204ENST00000474543 DCAF8L2P0C7V8 631 aa25.81■■□□□ 1.72
NELFCD-204ENST00000474543 ZCCHC6Q5VYS8 1495 aaKnown RBP25.71■■□□□ 1.71
NELFCD-204ENST00000474543 NACADO15069 1562 aa25.62■■□□□ 1.69
NELFCD-204ENST00000474543 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
NELFCD-204ENST00000474543 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
NELFCD-204ENST00000474543 DCAF1Q9Y4B6 1507 aa25.47■■□□□ 1.67
NELFCD-204ENST00000474543 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
NELFCD-204ENST00000474543 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
NELFCD-204ENST00000474543 SCRIBQ14160 1630 aa24.97■■□□□ 1.59
NELFCD-204ENST00000474543 PABPN1Q86U42 306 aaKnown RBP eCLIP24.9■■□□□ 1.588e-7■■□□□ 12.1
NELFCD-204ENST00000474543 BICRAQ9NZM4 1560 aa24.81■■□□□ 1.56
NELFCD-204ENST00000474543 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
NELFCD-204ENST00000474543 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
NELFCD-204ENST00000474543 DNAJC5BQ9UF47 199 aa24.2■■□□□ 1.46
NELFCD-204ENST00000474543 EIF4G1Q04637 1599 aaKnown RBP24.15■■□□□ 1.46
NELFCD-204ENST00000474543 CC2D2AQ9P2K1 1620 aa24.02■■□□□ 1.44
NELFCD-204ENST00000474543 CECR2Q9BXF3 1484 aa24.01■■□□□ 1.43
NELFCD-204ENST00000474543 BAZ1AQ9NRL2 1556 aaPredicted RBP23.88■■□□□ 1.41
NELFCD-204ENST00000474543 SMARCA4P51532 1647 aa23.87■■□□□ 1.41
NELFCD-204ENST00000474543 HRCP23327 699 aa23.78■■□□□ 1.4
NELFCD-204ENST00000474543 MROH2BQ7Z745 1585 aa23.77■■□□□ 1.4
NELFCD-204ENST00000474543 ATAD2BQ9ULI0 1458 aa23.7■■□□□ 1.38
NELFCD-204ENST00000474543 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
NELFCD-204ENST00000474543 NCAPD3P42695 1498 aa23.64■■□□□ 1.37
NELFCD-204ENST00000474543 PCGF6Q9BYE7 350 aa23.62■■□□□ 1.37
NELFCD-204ENST00000474543 PEG3Q9GZU2 1588 aa23.6■■□□□ 1.37
NELFCD-204ENST00000474543 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
NELFCD-204ENST00000474543 WIZO95785 1651 aa23.54■■□□□ 1.36
NELFCD-204ENST00000474543 BAZ1BQ9UIG0 1483 aaKnown RBP23.53■■□□□ 1.36
NELFCD-204ENST00000474543 HMGXB3Q12766 1538 aa23.53■■□□□ 1.36
NELFCD-204ENST00000474543 LOC105371045A0A1W2PR82 267 aa23.5■■□□□ 1.35
NELFCD-204ENST00000474543 TOP2AP11388 1531 aaKnown RBP23.27■■□□□ 1.32
NELFCD-204ENST00000474543 PPARGC1BQ86YN6 1023 aaKnown RBP23.23■■□□□ 1.31
NELFCD-204ENST00000474543 TRIM26Q12899 539 aaPredicted RBP23.17■■□□□ 1.3
NELFCD-204ENST00000474543 TRIM41Q8WV44 630 aa23.09■■□□□ 1.29
NELFCD-204ENST00000474543 NESP48681 1621 aa23.04■■□□□ 1.28
NELFCD-204ENST00000474543 CCDC88BA6NC98 1476 aa23.03■■□□□ 1.28
NELFCD-204ENST00000474543 CADPSQ9ULU8 1353 aa22.99■■□□□ 1.27
NELFCD-204ENST00000474543 LAMC3Q9Y6N6 1575 aa22.98■■□□□ 1.27
NELFCD-204ENST00000474543 ERCC6Q03468 1493 aa22.9■■□□□ 1.26
NELFCD-204ENST00000474543 FAM9AQ8IZU1 332 aaPredicted RBP22.88■■□□□ 1.25
NELFCD-204ENST00000474543 CFTRP13569 1480 aa22.88■■□□□ 1.25
NELFCD-204ENST00000474543 PDS5BQ9NTI5 1447 aa22.85■■□□□ 1.25
NELFCD-204ENST00000474543 KIF21AQ7Z4S6 1674 aa22.77■■□□□ 1.23
NELFCD-204ENST00000474543 ZEB1P37275 1124 aaPredicted RBP22.74■■□□□ 1.23
NELFCD-204ENST00000474543 FANCD2Q9BXW9 1451 aa22.73■■□□□ 1.23
NELFCD-204ENST00000474543 PRDM2Q13029 1718 aa22.71■■□□□ 1.23
NELFCD-204ENST00000474543 CEP164Q9UPV0 1460 aa22.68■■□□□ 1.22
NELFCD-204ENST00000474543 EHMT2Q96KQ7 1210 aa22.65■■□□□ 1.22
NELFCD-204ENST00000474543 THOC2Q8NI27 1593 aaKnown RBP22.61■■□□□ 1.21
NELFCD-204ENST00000474543 MRC2Q9UBG0 1479 aa22.59■■□□□ 1.21
NELFCD-204ENST00000474543 CUX2O14529 1486 aa22.52■■□□□ 1.19
NELFCD-204ENST00000474543 WDR62O43379 1518 aa22.49■■□□□ 1.19
NELFCD-204ENST00000474543 URB2Q14146 1524 aaKnown RBP22.47■■□□□ 1.19
NELFCD-204ENST00000474543 ABCC8Q09428 1581 aa22.39■■□□□ 1.17
NELFCD-204ENST00000474543 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
NELFCD-204ENST00000474543 DNMBPQ6XZF7 1577 aa22.36■■□□□ 1.17
NELFCD-204ENST00000474543 CUX1P39880 1505 aa22.28■■□□□ 1.16
NELFCD-204ENST00000474543 WRNQ14191 1432 aaPredicted RBP eCLIP22.24■■□□□ 1.15
NELFCD-204ENST00000474543 POLA1P09884 1462 aaPredicted RBP22.21■■□□□ 1.15
NELFCD-204ENST00000474543 FGD5Q6ZNL6 1462 aa22.19■■□□□ 1.14
NELFCD-204ENST00000474543 IFT140Q96RY7 1462 aa22.18■■□□□ 1.14
NELFCD-204ENST00000474543 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.18■■□□□ 1.14
NELFCD-204ENST00000474543 SOGA1O94964 1423 aa22.17■■□□□ 1.14
NELFCD-204ENST00000474543 SYNJ1O43426 1573 aa22.16■■□□□ 1.14
NELFCD-204ENST00000474543 CEP162Q5TB80 1403 aa22.15■■□□□ 1.14
NELFCD-204ENST00000474543 TOP2BQ02880 1626 aa22.14■■□□□ 1.14
NELFCD-204ENST00000474543 CCER1Q8TC90 406 aaPredicted RBP22.13■■□□□ 1.13
NELFCD-204ENST00000474543 RAD54L2Q9Y4B4 1467 aa22.13■■□□□ 1.13
NELFCD-204ENST00000474543 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
NELFCD-204ENST00000474543 TNIKQ9UKE5 1360 aa22.12■■□□□ 1.13
NELFCD-204ENST00000474543 EEA1Q15075 1411 aa22.1■■□□□ 1.13
NELFCD-204ENST00000474543 TARBP1Q13395 1621 aaKnown RBP22.1■■□□□ 1.13
NELFCD-204ENST00000474543 ZNF608Q9ULD9 1512 aaPredicted RBP22.08■■□□□ 1.12
NELFCD-204ENST00000474543 RUSC2Q8N2Y8 1516 aa22.06■■□□□ 1.12
NELFCD-204ENST00000474543 CSRNP3Q8WYN3 585 aa22.06■■□□□ 1.12
NELFCD-204ENST00000474543 SCAF1Q9H7N4 1312 aaKnown RBP22.01■■□□□ 1.11
NELFCD-204ENST00000474543 TDRD9Q8NDG6 1382 aaKnown RBP22■■□□□ 1.11
NELFCD-204ENST00000474543 AQRO60306 1485 aaKnown RBP eCLIP22■■□□□ 1.112e-7■■■■□ 22.5
NELFCD-204ENST00000474543 EIF4G3O43432 1585 aaKnown RBP21.98■■□□□ 1.11
NELFCD-204ENST00000474543 TTBK1Q5TCY1 1321 aaPredicted RBP21.97■■□□□ 1.11
NELFCD-204ENST00000474543 ABCA10Q8WWZ4 1543 aa21.96■■□□□ 1.11
NELFCD-204ENST00000474543 UBTFP17480 764 aaKnown RBP21.96■■□□□ 1.11
NELFCD-204ENST00000474543 GOLGA3Q08378 1498 aa21.96■■□□□ 1.11
NELFCD-204ENST00000474543 WDR97A6NE52 1622 aa21.95■■□□□ 1.11
NELFCD-204ENST00000474543 GAPVD1Q14C86 1478 aa21.88■■□□□ 1.09
NELFCD-204ENST00000474543 ABCA5Q8WWZ7 1642 aa21.85■■□□□ 1.09
NELFCD-204ENST00000474543 GRIN2BQ13224 1484 aa21.84■■□□□ 1.09
NELFCD-204ENST00000474543 KIF21BO75037 1637 aa21.82■■□□□ 1.08
NELFCD-204ENST00000474543 DIEXFQ68CQ4 756 aaKnown RBP21.8■■□□□ 1.08
NELFCD-204ENST00000474543 PBRM1Q86U86 1689 aa21.8■■□□□ 1.08
NELFCD-204ENST00000474543 SNAPC4Q5SXM2 1469 aa21.79■■□□□ 1.08
NELFCD-204ENST00000474543 KIF27Q86VH2 1401 aa21.77■■□□□ 1.08
NELFCD-204ENST00000474543 FBLN2P98095 1184 aa21.77■■□□□ 1.07
NELFCD-204ENST00000474543 ACIN1Q9UKV3 1341 aaKnown RBP21.75■■□□□ 1.07
NELFCD-204ENST00000474543 MAGI1Q96QZ7 1491 aaPredicted RBP21.75■■□□□ 1.07
NELFCD-204ENST00000474543 PELP1Q8IZL8 1130 aaKnown RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms