Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DUX4L29-201ENST00000425409 679 ntBASIC18.3■□□□□ 0.52
HMGB3O15347 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB3O15347 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB3O15347 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB3O15347 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB3O15347 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB3O15347 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB3O15347 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB3O15347 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB3O15347 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB3O15347 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB3O15347 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
HMGB3O15347 LINC00565-201ENST00000562710 2331 ntBASIC18.28■□□□□ 0.52
HMGB3O15347 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB3O15347 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB3O15347 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HMGB3O15347 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB3O15347 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGB3O15347 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGB3O15347 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB3O15347 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGB3O15347 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB3O15347 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB3O15347 AC233723.2-201ENST00000623798 2106 ntBASIC18.28■□□□□ 0.52
HMGB3O15347 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB3O15347 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
HMGB3O15347 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB3O15347 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 NRG1-221ENST00000614767 762 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB3O15347 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB3O15347 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HMGB3O15347 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.27■□□□□ 0.51
HMGB3O15347 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.27■□□□□ 0.51
HMGB3O15347 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGB3O15347 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.26■□□□□ 0.51
HMGB3O15347 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HMGB3O15347 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGB3O15347 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB3O15347 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGB3O15347 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB3O15347 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB3O15347 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB3O15347 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB3O15347 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGB3O15347 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HMGB3O15347 AC148477.6-201ENST00000623746 465 ntBASIC18.25■□□□□ 0.51
HMGB3O15347 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
HMGB3O15347 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGB3O15347 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB3O15347 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB3O15347 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGB3O15347 AC008813.1-201ENST00000536597 885 ntBASIC18.24■□□□□ 0.51
HMGB3O15347 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HMGB3O15347 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGB3O15347 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB3O15347 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB3O15347 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB3O15347 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB3O15347 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HMGB3O15347 HLA-L-211ENST00000482052 1765 ntBASIC18.23■□□□□ 0.51
HMGB3O15347 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGB3O15347 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB3O15347 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HMGB3O15347 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB3O15347 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB3O15347 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18.22■□□□□ 0.51
HMGB3O15347 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.22■□□□□ 0.51
HMGB3O15347 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.22■□□□□ 0.51
HMGB3O15347 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HMGB3O15347 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGB3O15347 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HMGB3O15347 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
HMGB3O15347 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGB3O15347 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGB3O15347 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms