RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NISCHQ9Y2I1 1504 aa43.18■■■■■ 4.5
TRIM28-201ENST00000253024 SHROOM4Q9ULL8 1493 aa38.19■■■■□ 3.7
TRIM28-201ENST00000253024 SUPT5HO00267 1087 aaKnown RBP37.49■■■■□ 3.59
TRIM28-201ENST00000253024 DCAF8L2P0C7V8 631 aa37.31■■■■□ 3.56
TRIM28-201ENST00000253024 ZCCHC6Q5VYS8 1495 aaKnown RBP36.43■■■■□ 3.42
TRIM28-201ENST00000253024 CCDC180Q9P1Z9 1646 aa36.07■■■■□ 3.37
TRIM28-201ENST00000253024 CHIC1Q5VXU3 224 aa35.93■■■■□ 3.34
TRIM28-201ENST00000253024 MYO15BQ96JP2 1530 aa35.84■■■■□ 3.33
TRIM28-201ENST00000253024 PCGF6Q9BYE7 350 aa35.41■■■■□ 3.26
TRIM28-201ENST00000253024 LOC105371045A0A1W2PR82 267 aa35.39■■■■□ 3.26
TRIM28-201ENST00000253024 EHMT2Q96KQ7 1210 aa35.07■■■■□ 3.2
TRIM28-201ENST00000253024 HRCP23327 699 aa34.95■■■■□ 3.19
TRIM28-201ENST00000253024 PPARGC1BQ86YN6 1023 aaKnown RBP34.92■■■■□ 3.18
TRIM28-201ENST00000253024 FAM9AQ8IZU1 332 aaPredicted RBP34.86■■■■□ 3.17
TRIM28-201ENST00000253024 DCAF1Q9Y4B6 1507 aa34.82■■■■□ 3.16
TRIM28-201ENST00000253024 SCRIBQ14160 1630 aa34.8■■■■□ 3.16
TRIM28-201ENST00000253024 ABCC9O60706 1549 aa34.58■■■■□ 3.13
TRIM28-201ENST00000253024 TRIM41Q8WV44 630 aa34.52■■■■□ 3.12
TRIM28-201ENST00000253024 RSF1Q96T23 1441 aaPredicted RBP34.46■■■■□ 3.11
TRIM28-201ENST00000253024 RB1CC1Q8TDY2 1594 aa34.19■■■■□ 3.06
TRIM28-201ENST00000253024 CECR2Q9BXF3 1484 aa34.15■■■■□ 3.06
TRIM28-201ENST00000253024 TRIM26Q12899 539 aaPredicted RBP34.14■■■■□ 3.06
TRIM28-201ENST00000253024 MROH2BQ7Z745 1585 aa33.86■■■■□ 3.01
TRIM28-201ENST00000253024 TTBK1Q5TCY1 1321 aaPredicted RBP33.84■■■■□ 3.01
TRIM28-201ENST00000253024 WIZO95785 1651 aa33.68■■■□□ 2.98
TRIM28-201ENST00000253024 NACADO15069 1562 aa33.58■■■□□ 2.97
TRIM28-201ENST00000253024 PABPN1Q86U42 306 aaKnown RBP eCLIP33.5■■■□□ 2.951e-6■■□□□ 14.2
TRIM28-201ENST00000253024 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.33■■■□□ 2.93
TRIM28-201ENST00000253024 ABCC8Q09428 1581 aa33.23■■■□□ 2.91
TRIM28-201ENST00000253024 ZEB1P37275 1124 aaPredicted RBP33.12■■■□□ 2.89
TRIM28-201ENST00000253024 CCER1Q8TC90 406 aaPredicted RBP33.09■■■□□ 2.89
TRIM28-201ENST00000253024 CCDC88BA6NC98 1476 aa33.08■■■□□ 2.89
TRIM28-201ENST00000253024 BAZ1AQ9NRL2 1556 aaPredicted RBP33.06■■■□□ 2.88
TRIM28-201ENST00000253024 UBTFP17480 764 aaKnown RBP33.06■■■□□ 2.88
TRIM28-201ENST00000253024 RANGAP1P46060 587 aaPredicted RBP33.04■■■□□ 2.88
TRIM28-201ENST00000253024 SOGA1O94964 1423 aa32.98■■■□□ 2.87
TRIM28-201ENST00000253024 RUSC2Q8N2Y8 1516 aa32.86■■■□□ 2.85
TRIM28-201ENST00000253024 SMARCA4P51532 1647 aa32.82■■■□□ 2.84
TRIM28-201ENST00000253024 TOP2AP11388 1531 aaKnown RBP32.79■■■□□ 2.84
TRIM28-201ENST00000253024 SMARCA2P51531 1590 aa32.74■■■□□ 2.83
TRIM28-201ENST00000253024 CSRNP3Q8WYN3 585 aa32.74■■■□□ 2.83
TRIM28-201ENST00000253024 EIF4G1Q04637 1599 aaKnown RBP32.74■■■□□ 2.83
TRIM28-201ENST00000253024 CEP162Q5TB80 1403 aa32.7■■■□□ 2.83
TRIM28-201ENST00000253024 UNC13AQ9UPW8 1703 aa32.69■■■□□ 2.82
TRIM28-201ENST00000253024 HNRNPUL2Q1KMD3 747 aaKnown RBP32.56■■■□□ 2.8
TRIM28-201ENST00000253024 SCAF1Q9H7N4 1312 aaKnown RBP32.53■■■□□ 2.8
TRIM28-201ENST00000253024 WRNQ14191 1432 aaPredicted RBP eCLIP32.41■■■□□ 2.78
TRIM28-201ENST00000253024 TNIKQ9UKE5 1360 aa32.39■■■□□ 2.78
TRIM28-201ENST00000253024 BICRAQ9NZM4 1560 aa32.37■■■□□ 2.77
TRIM28-201ENST00000253024 DIEXFQ68CQ4 756 aaKnown RBP32.34■■■□□ 2.77
TRIM28-201ENST00000253024 GOLGA3Q08378 1498 aa32.21■■■□□ 2.75
TRIM28-201ENST00000253024 NEUROD1Q13562 356 aa32.21■■■□□ 2.75
TRIM28-201ENST00000253024 SYNJ1O43426 1573 aa32.18■■■□□ 2.74
TRIM28-201ENST00000253024 YTHDC1Q96MU7 727 aaKnown RBP32.18■■■□□ 2.74
TRIM28-201ENST00000253024 APLP2Q06481 763 aa32.17■■■□□ 2.74
TRIM28-201ENST00000253024 BAZ1BQ9UIG0 1483 aaKnown RBP32.14■■■□□ 2.74
TRIM28-201ENST00000253024 ATAD2BQ9ULI0 1458 aa32.12■■■□□ 2.73
TRIM28-201ENST00000253024 CLIP1P30622 1438 aa32.09■■■□□ 2.73
TRIM28-201ENST00000253024 EEA1Q15075 1411 aa32.08■■■□□ 2.73
TRIM28-201ENST00000253024 RAPGEF2Q9Y4G8 1499 aa32.04■■■□□ 2.72
TRIM28-201ENST00000253024 ACIN1Q9UKV3 1341 aaKnown RBP31.99■■■□□ 2.71
TRIM28-201ENST00000253024 CEP164Q9UPV0 1460 aa31.96■■■□□ 2.71
TRIM28-201ENST00000253024 GTF3C3Q9Y5Q9 886 aa31.92■■■□□ 2.7
TRIM28-201ENST00000253024 ZNF316A6NFI3 1004 aaPredicted RBP31.89■■■□□ 2.7
TRIM28-201ENST00000253024 ITGAEP38570 1179 aa31.88■■■□□ 2.69
TRIM28-201ENST00000253024 KANK4Q5T7N3 995 aaPredicted RBP31.77■■■□□ 2.68
TRIM28-201ENST00000253024 PEG3Q9GZU2 1588 aa31.77■■■□□ 2.68
TRIM28-201ENST00000253024 VPS8Q8N3P4 1428 aa31.76■■■□□ 2.67
TRIM28-201ENST00000253024 CENPBP07199 599 aaPredicted RBP31.74■■■□□ 2.67
TRIM28-201ENST00000253024 MIER1Q8N108 512 aa31.74■■■□□ 2.67
TRIM28-201ENST00000253024 KIF21BO75037 1637 aa31.64■■■□□ 2.66
TRIM28-201ENST00000253024 ATP1B4Q9UN42 357 aaPredicted RBP31.58■■■□□ 2.65
TRIM28-201ENST00000253024 P3H3Q8IVL6 736 aa31.53■■■□□ 2.64
TRIM28-201ENST00000253024 TOP2BQ02880 1626 aa31.48■■■□□ 2.63
TRIM28-201ENST00000253024 CUX1P39880 1505 aa31.42■■■□□ 2.62
TRIM28-201ENST00000253024 ARAP1Q96P48 1450 aa31.41■■■□□ 2.62
TRIM28-201ENST00000253024 KIF27Q86VH2 1401 aa31.34■■■□□ 2.61
TRIM28-201ENST00000253024 PRXQ9BXM0 1461 aa31.33■■■□□ 2.61
TRIM28-201ENST00000253024 NCAPD3P42695 1498 aa31.26■■■□□ 2.59
TRIM28-201ENST00000253024 DHX57Q6P158 1386 aaKnown RBP31.26■■■□□ 2.59
TRIM28-201ENST00000253024 CUX2O14529 1486 aa31.23■■■□□ 2.59
TRIM28-201ENST00000253024 FAM50AQ14320 339 aaKnown RBP31.22■■■□□ 2.59
TRIM28-201ENST00000253024 PELP1Q8IZL8 1130 aaKnown RBP31.2■■■□□ 2.58
TRIM28-201ENST00000253024 BIVM-ERCC5R4GMW8 1640 aa31.2■■■□□ 2.58
TRIM28-201ENST00000253024 ARHGAP35Q9NRY4 1499 aa31.14■■■□□ 2.58
TRIM28-201ENST00000253024 CFTRP13569 1480 aa31.13■■■□□ 2.57
TRIM28-201ENST00000253024 ERICH3Q5RHP9 1530 aa31.09■■■□□ 2.57
TRIM28-201ENST00000253024 IGF1RP08069 1367 aa31.08■■■□□ 2.57
TRIM28-201ENST00000253024 CCNB3Q8WWL7 1395 aa31.08■■■□□ 2.57
TRIM28-201ENST00000253024 HIRIP3Q9BW71 556 aaPredicted RBP31.06■■■□□ 2.56
TRIM28-201ENST00000253024 HMGXB3Q12766 1538 aa31.05■■■□□ 2.56
TRIM28-201ENST00000253024 CARMIL1Q5VZK9 1371 aa31.03■■■□□ 2.56
TRIM28-201ENST00000253024 SIN3AQ96ST3 1273 aa31.02■■■□□ 2.56
TRIM28-201ENST00000253024 KCNH8Q96L42 1107 aa30.98■■■□□ 2.55
TRIM28-201ENST00000253024 CADPSQ9ULU8 1353 aa30.95■■■□□ 2.55
TRIM28-201ENST00000253024 FGD5Q6ZNL6 1462 aa30.95■■■□□ 2.55
TRIM28-201ENST00000253024 RAB3GAP2Q9H2M9 1393 aa30.93■■■□□ 2.54
TRIM28-201ENST00000253024 RAD54L2Q9Y4B4 1467 aa30.89■■■□□ 2.54
TRIM28-201ENST00000253024 RRBP1Q9P2E9 1410 aaKnown RBP30.89■■■□□ 2.54
TRIM28-201ENST00000253024 PHLDB1Q86UU1 1377 aa30.85■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms