Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC36.07■■■■□ 3.36
COL17A1Q9UMD9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC36.07■■■■□ 3.36
COL17A1Q9UMD9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC36.06■■■■□ 3.36
COL17A1Q9UMD9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
COL17A1Q9UMD9 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC36.06■■■■□ 3.36
COL17A1Q9UMD9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
COL17A1Q9UMD9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC36.06■■■■□ 3.36
COL17A1Q9UMD9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC36.05■■■■□ 3.36
COL17A1Q9UMD9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC36.05■■■■□ 3.36
COL17A1Q9UMD9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC36.05■■■■□ 3.36
COL17A1Q9UMD9 AC004911.1-201ENST00000416316 871 ntBASIC36.05■■■■□ 3.36
COL17A1Q9UMD9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC36.05■■■■□ 3.36
COL17A1Q9UMD9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC36.05■■■■□ 3.36
COL17A1Q9UMD9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
COL17A1Q9UMD9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
COL17A1Q9UMD9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC36.04■■■■□ 3.36
COL17A1Q9UMD9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC36.04■■■■□ 3.36
COL17A1Q9UMD9 SYT6-210ENST00000641643 1587 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L2-201ENST00000561772 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L6-201ENST00000626483 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L1-201ENST00000627662 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L8-201ENST00000629013 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L3-201ENST00000630187 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L7-201ENST00000630678 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 DUX4L5-201ENST00000630834 1275 ntBASIC36.03■■■■□ 3.36
COL17A1Q9UMD9 AC099791.1-201ENST00000416440 715 ntBASIC36.02■■■■□ 3.36
COL17A1Q9UMD9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC36.02■■■■□ 3.36
COL17A1Q9UMD9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC36.02■■■■□ 3.36
COL17A1Q9UMD9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC36.02■■■■□ 3.36
COL17A1Q9UMD9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
COL17A1Q9UMD9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
COL17A1Q9UMD9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC36.01■■■■□ 3.36
COL17A1Q9UMD9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC36.01■■■■□ 3.36
COL17A1Q9UMD9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
COL17A1Q9UMD9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC36.01■■■■□ 3.35
COL17A1Q9UMD9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC36.01■■■■□ 3.35
COL17A1Q9UMD9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC36.01■■■■□ 3.35
COL17A1Q9UMD9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC36■■■■□ 3.35
COL17A1Q9UMD9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC36■■■■□ 3.35
COL17A1Q9UMD9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC36■■■■□ 3.35
COL17A1Q9UMD9 BX255925.1-201ENST00000566954 1854 ntBASIC36■■■■□ 3.35
COL17A1Q9UMD9 AC008764.7-201ENST00000593779 1081 ntBASIC36■■■■□ 3.35
COL17A1Q9UMD9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
COL17A1Q9UMD9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
COL17A1Q9UMD9 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
COL17A1Q9UMD9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC35.99■■■■□ 3.35
COL17A1Q9UMD9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC35.99■■■■□ 3.35
COL17A1Q9UMD9 HLA-L-209ENST00000420110 1011 ntBASIC35.99■■■■□ 3.35
COL17A1Q9UMD9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC35.98■■■■□ 3.35
COL17A1Q9UMD9 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC35.98■■■■□ 3.35
COL17A1Q9UMD9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC35.98■■■■□ 3.35
COL17A1Q9UMD9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC35.97■■■■□ 3.35
COL17A1Q9UMD9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
COL17A1Q9UMD9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC35.97■■■■□ 3.35
COL17A1Q9UMD9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
COL17A1Q9UMD9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
COL17A1Q9UMD9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC35.96■■■■□ 3.35
COL17A1Q9UMD9 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC35.95■■■■□ 3.35
COL17A1Q9UMD9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
COL17A1Q9UMD9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC35.95■■■■□ 3.35
COL17A1Q9UMD9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC35.94■■■■□ 3.34
COL17A1Q9UMD9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC35.94■■■■□ 3.34
COL17A1Q9UMD9 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC35.94■■■■□ 3.34
COL17A1Q9UMD9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC35.94■■■■□ 3.34
COL17A1Q9UMD9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
COL17A1Q9UMD9 AK1-201ENST00000223836 736 ntTSL 3 BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 ABHD17AP1-201ENST00000358206 933 ntBASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 PTCHD3P2-201ENST00000424937 1205 ntBASIC35.92■■■■□ 3.34
COL17A1Q9UMD9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC35.91■■■■□ 3.34
COL17A1Q9UMD9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC35.91■■■■□ 3.34
COL17A1Q9UMD9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC35.91■■■■□ 3.34
COL17A1Q9UMD9 AC011298.3-201ENST00000615796 283 ntBASIC35.91■■■■□ 3.34
COL17A1Q9UMD9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC35.91■■■■□ 3.34
COL17A1Q9UMD9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC35.9■■■■□ 3.34
COL17A1Q9UMD9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms