RNA–Protein interactions for RNA: ENST00000368291.6

ECHDC1-203, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2 BASIC

Gene ECHDC1, Length 1,354 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-203ENST00000368291 NISCHQ9Y2I1 1504 aa54.72■■■■■ 6.35
ECHDC1-203ENST00000368291 CCDC180Q9P1Z9 1646 aa48.67■■■■■ 5.38
ECHDC1-203ENST00000368291 ABCC9O60706 1549 aa47.56■■■■■ 5.2
ECHDC1-203ENST00000368291 RB1CC1Q8TDY2 1594 aa45.75■■■■■ 4.91
ECHDC1-203ENST00000368291 NACADO15069 1562 aa45.71■■■■■ 4.91
ECHDC1-203ENST00000368291 DCAF8L2P0C7V8 631 aa45.6■■■■■ 4.89
ECHDC1-203ENST00000368291 ZCCHC6Q5VYS8 1495 aaKnown RBP45.59■■■■■ 4.89
ECHDC1-203ENST00000368291 MYO15BQ96JP2 1530 aa45.45■■■■■ 4.87
ECHDC1-203ENST00000368291 DCAF1Q9Y4B6 1507 aa45.27■■■■■ 4.84
ECHDC1-203ENST00000368291 UNC13AQ9UPW8 1703 aa44.9■■■■■ 4.78
ECHDC1-203ENST00000368291 BICRAQ9NZM4 1560 aa44.47■■■■■ 4.71
ECHDC1-203ENST00000368291 PABPN1Q86U42 306 aaKnown RBP eCLIP44.43■■■■■ 4.7
ECHDC1-203ENST00000368291 SCRIBQ14160 1630 aa44.4■■■■■ 4.7
ECHDC1-203ENST00000368291 SHROOM4Q9ULL8 1493 aa43.87■■■■■ 4.61
ECHDC1-203ENST00000368291 DNAJC5BQ9UF47 199 aa43.7■■■■■ 4.59
ECHDC1-203ENST00000368291 EIF4G1Q04637 1599 aaKnown RBP43.23■■■■■ 4.51
ECHDC1-203ENST00000368291 CC2D2AQ9P2K1 1620 aa43.07■■■■■ 4.49
ECHDC1-203ENST00000368291 CECR2Q9BXF3 1484 aa42.71■■■■■ 4.43
ECHDC1-203ENST00000368291 SMARCA4P51532 1647 aa42.48■■■■■ 4.39
ECHDC1-203ENST00000368291 BAZ1AQ9NRL2 1556 aaPredicted RBP42.38■■■■■ 4.38
ECHDC1-203ENST00000368291 ATAD2BQ9ULI0 1458 aa42.21■■■■■ 4.35
ECHDC1-203ENST00000368291 MROH2BQ7Z745 1585 aa42.2■■■■■ 4.35
ECHDC1-203ENST00000368291 NCAPD3P42695 1498 aa42.18■■■■■ 4.34
ECHDC1-203ENST00000368291 SMARCA2P51531 1590 aa42.14■■■■■ 4.34
ECHDC1-203ENST00000368291 PEG3Q9GZU2 1588 aa42.07■■■■■ 4.32
ECHDC1-203ENST00000368291 HMGXB3Q12766 1538 aa41.98■■■■■ 4.31
ECHDC1-203ENST00000368291 BAZ1BQ9UIG0 1483 aaKnown RBP41.83■■■■■ 4.29
ECHDC1-203ENST00000368291 WIZO95785 1651 aa41.78■■■■■ 4.28
ECHDC1-203ENST00000368291 RSF1Q96T23 1441 aaPredicted RBP41.69■■■■■ 4.26
ECHDC1-203ENST00000368291 TOP2AP11388 1531 aaKnown RBP41.27■■■■■ 4.2
ECHDC1-203ENST00000368291 NESP48681 1621 aa41.21■■■■■ 4.19
ECHDC1-203ENST00000368291 LAMC3Q9Y6N6 1575 aa41.08■■■■■ 4.17
ECHDC1-203ENST00000368291 CADPSQ9ULU8 1353 aa40.93■■■■■ 4.14
ECHDC1-203ENST00000368291 ERCC6Q03468 1493 aa40.93■■■■■ 4.14
ECHDC1-203ENST00000368291 CCDC88BA6NC98 1476 aa40.79■■■■■ 4.12
ECHDC1-203ENST00000368291 KIF21AQ7Z4S6 1674 aa40.77■■■■■ 4.12
ECHDC1-203ENST00000368291 PDS5BQ9NTI5 1447 aa40.73■■■■■ 4.11
ECHDC1-203ENST00000368291 CFTRP13569 1480 aa40.72■■■■■ 4.11
ECHDC1-203ENST00000368291 THOC2Q8NI27 1593 aaKnown RBP40.6■■■■■ 4.09
ECHDC1-203ENST00000368291 SUPT5HO00267 1087 aaKnown RBP40.57■■■■■ 4.08
ECHDC1-203ENST00000368291 CUX2O14529 1486 aa40.53■■■■■ 4.08
ECHDC1-203ENST00000368291 PRDM2Q13029 1718 aa40.51■■■■■ 4.08
ECHDC1-203ENST00000368291 FANCD2Q9BXW9 1451 aa40.47■■■■■ 4.07
ECHDC1-203ENST00000368291 CEP164Q9UPV0 1460 aa40.41■■■■■ 4.06
ECHDC1-203ENST00000368291 MRC2Q9UBG0 1479 aa40.35■■■■■ 4.05
ECHDC1-203ENST00000368291 WDR62O43379 1518 aa40.26■■■■■ 4.04
ECHDC1-203ENST00000368291 URB2Q14146 1524 aaKnown RBP40.11■■■■■ 4.01
ECHDC1-203ENST00000368291 TOPBP1Q92547 1522 aa39.85■■■■□ 3.97
ECHDC1-203ENST00000368291 DNMBPQ6XZF7 1577 aa39.8■■■■□ 3.96
ECHDC1-203ENST00000368291 ABCC8Q09428 1581 aa39.78■■■■□ 3.96
ECHDC1-203ENST00000368291 CUX1P39880 1505 aa39.58■■■■□ 3.93
ECHDC1-203ENST00000368291 IFT140Q96RY7 1462 aa39.55■■■■□ 3.92
ECHDC1-203ENST00000368291 POLA1P09884 1462 aaPredicted RBP39.52■■■■□ 3.92
ECHDC1-203ENST00000368291 TARBP1Q13395 1621 aaKnown RBP39.47■■■■□ 3.91
ECHDC1-203ENST00000368291 ZNF608Q9ULD9 1512 aaPredicted RBP39.43■■■■□ 3.9
ECHDC1-203ENST00000368291 FGD5Q6ZNL6 1462 aa39.41■■■■□ 3.9
ECHDC1-203ENST00000368291 RAD54L2Q9Y4B4 1467 aa39.35■■■■□ 3.89
ECHDC1-203ENST00000368291 SOGA1O94964 1423 aa39.31■■■■□ 3.88
ECHDC1-203ENST00000368291 EIF4G3O43432 1585 aaKnown RBP39.28■■■■□ 3.88
ECHDC1-203ENST00000368291 DNAJC5Q9H3Z4 198 aa39.27■■■■□ 3.88
ECHDC1-203ENST00000368291 WRNQ14191 1432 aaPredicted RBP eCLIP39.27■■■■□ 3.88
ECHDC1-203ENST00000368291 BIVM-ERCC5R4GMW8 1640 aa39.26■■■■□ 3.88
ECHDC1-203ENST00000368291 SYNJ1O43426 1573 aa39.25■■■■□ 3.87
ECHDC1-203ENST00000368291 TOP2BQ02880 1626 aa39.24■■■■□ 3.87
ECHDC1-203ENST00000368291 AQRO60306 1485 aaKnown RBP eCLIP39.19■■■■□ 3.86
ECHDC1-203ENST00000368291 WDR97A6NE52 1622 aa39.18■■■■□ 3.86
ECHDC1-203ENST00000368291 TDRD9Q8NDG6 1382 aaKnown RBP39.1■■■■□ 3.85
ECHDC1-203ENST00000368291 ABCA10Q8WWZ4 1543 aa39.03■■■■□ 3.84
ECHDC1-203ENST00000368291 ABCA5Q8WWZ7 1642 aa38.92■■■■□ 3.82
ECHDC1-203ENST00000368291 GAPVD1Q14C86 1478 aa38.87■■■■□ 3.81
ECHDC1-203ENST00000368291 PBRM1Q86U86 1689 aa38.87■■■■□ 3.81
ECHDC1-203ENST00000368291 GRIN2BQ13224 1484 aa38.85■■■■□ 3.81
ECHDC1-203ENST00000368291 CHD1O14646 1710 aa38.84■■■■□ 3.81
ECHDC1-203ENST00000368291 OSCARQ8IYS5 282 aa38.82■■■■□ 3.81
ECHDC1-203ENST00000368291 SNAPC4Q5SXM2 1469 aa38.82■■■■□ 3.8
ECHDC1-203ENST00000368291 MAGI1Q96QZ7 1491 aaPredicted RBP38.75■■■■□ 3.79
ECHDC1-203ENST00000368291 FBLN2P98095 1184 aa38.63■■■■□ 3.77
ECHDC1-203ENST00000368291 SYNJ2O15056 1496 aa38.6■■■■□ 3.77
ECHDC1-203ENST00000368291 ERICH3Q5RHP9 1530 aa38.56■■■■□ 3.76
ECHDC1-203ENST00000368291 CHMP7Q8WUX9 453 aaPredicted RBP38.53■■■■□ 3.76
ECHDC1-203ENST00000368291 ADAMTS12P58397 1594 aa38.52■■■■□ 3.76
ECHDC1-203ENST00000368291 KIF27Q86VH2 1401 aa38.41■■■■□ 3.74
ECHDC1-203ENST00000368291 FHAD1B1AJZ9 1412 aa38.41■■■■□ 3.74
ECHDC1-203ENST00000368291 CLASP1Q7Z460 1538 aa38.38■■■■□ 3.73
ECHDC1-203ENST00000368291 GRIN2AQ12879 1464 aa38.37■■■■□ 3.73
ECHDC1-203ENST00000368291 IGF1RP08069 1367 aa38.31■■■■□ 3.72
ECHDC1-203ENST00000368291 RIMBP3CA6NJZ7 1639 aa38.3■■■■□ 3.72
ECHDC1-203ENST00000368291 RIMBP3BA6NNM3 1639 aa38.3■■■■□ 3.72
ECHDC1-203ENST00000368291 RIMBP3Q9UFD9 1639 aa38.3■■■■□ 3.72
ECHDC1-203ENST00000368291 TRIM41Q8WV44 630 aa38.29■■■■□ 3.72
ECHDC1-203ENST00000368291 ARHGEF11O15085 1522 aa38.26■■■■□ 3.72
ECHDC1-203ENST00000368291 CEP170Q5SW79 1584 aa38.24■■■■□ 3.71
ECHDC1-203ENST00000368291 CUL7Q14999 1698 aa38.23■■■■□ 3.71
ECHDC1-203ENST00000368291 NUP160Q12769 1436 aa38.21■■■■□ 3.71
ECHDC1-203ENST00000368291 RUSC2Q8N2Y8 1516 aa38.19■■■■□ 3.7
ECHDC1-203ENST00000368291 CARMIL1Q5VZK9 1371 aa38.06■■■■□ 3.68
ECHDC1-203ENST00000368291 SHROOM2Q13796 1616 aa37.97■■■■□ 3.67
ECHDC1-203ENST00000368291 ARAP1Q96P48 1450 aa37.97■■■■□ 3.67
ECHDC1-203ENST00000368291 CHIC1Q5VXU3 224 aa37.92■■■■□ 3.66
ECHDC1-203ENST00000368291 ERCC6L2Q5T890 1561 aa37.88■■■■□ 3.65
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms