RNA–Protein interactions for RNA: ENST00000424937.1

PTCHD3P2-201, Transcript of patched domain containing 3 pseudogene 2, humanhuman

BASIC

Gene PTCHD3P2, Length 1,205 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3P2-201ENST00000424937 NISCHQ9Y2I1 1504 aa54.51■■■■■ 6.32
PTCHD3P2-201ENST00000424937 CCDC180Q9P1Z9 1646 aa48.62■■■■■ 5.37
PTCHD3P2-201ENST00000424937 ABCC9O60706 1549 aa47.59■■■■■ 5.21
PTCHD3P2-201ENST00000424937 RB1CC1Q8TDY2 1594 aa45.75■■■■■ 4.92
PTCHD3P2-201ENST00000424937 NACADO15069 1562 aa45.64■■■■■ 4.9
PTCHD3P2-201ENST00000424937 DCAF8L2P0C7V8 631 aa45.52■■■■■ 4.88
PTCHD3P2-201ENST00000424937 ZCCHC6Q5VYS8 1495 aaKnown RBP45.42■■■■■ 4.86
PTCHD3P2-201ENST00000424937 MYO15BQ96JP2 1530 aa45.29■■■■■ 4.84
PTCHD3P2-201ENST00000424937 DCAF1Q9Y4B6 1507 aa45.08■■■■■ 4.81
PTCHD3P2-201ENST00000424937 UNC13AQ9UPW8 1703 aa44.87■■■■■ 4.77
PTCHD3P2-201ENST00000424937 PABPN1Q86U42 306 aaKnown RBP eCLIP44.38■■■■■ 4.7
PTCHD3P2-201ENST00000424937 BICRAQ9NZM4 1560 aa44.37■■■■■ 4.69
PTCHD3P2-201ENST00000424937 SCRIBQ14160 1630 aa44.36■■■■■ 4.69
PTCHD3P2-201ENST00000424937 SHROOM4Q9ULL8 1493 aa43.85■■■■■ 4.61
PTCHD3P2-201ENST00000424937 DNAJC5BQ9UF47 199 aa43.65■■■■■ 4.58
PTCHD3P2-201ENST00000424937 EIF4G1Q04637 1599 aaKnown RBP43.21■■■■■ 4.51
PTCHD3P2-201ENST00000424937 CC2D2AQ9P2K1 1620 aa43.08■■■■■ 4.49
PTCHD3P2-201ENST00000424937 CECR2Q9BXF3 1484 aa42.74■■■■■ 4.43
PTCHD3P2-201ENST00000424937 SMARCA4P51532 1647 aa42.39■■■■■ 4.38
PTCHD3P2-201ENST00000424937 BAZ1AQ9NRL2 1556 aaPredicted RBP42.28■■■■■ 4.36
PTCHD3P2-201ENST00000424937 ATAD2BQ9ULI0 1458 aa42.09■■■■■ 4.33
PTCHD3P2-201ENST00000424937 SMARCA2P51531 1590 aa42.09■■■■■ 4.33
PTCHD3P2-201ENST00000424937 NCAPD3P42695 1498 aa42.04■■■■■ 4.32
PTCHD3P2-201ENST00000424937 MROH2BQ7Z745 1585 aa42.03■■■■■ 4.32
PTCHD3P2-201ENST00000424937 HMGXB3Q12766 1538 aa41.93■■■■■ 4.3
PTCHD3P2-201ENST00000424937 PEG3Q9GZU2 1588 aa41.93■■■■■ 4.3
PTCHD3P2-201ENST00000424937 BAZ1BQ9UIG0 1483 aaKnown RBP41.79■■■■■ 4.28
PTCHD3P2-201ENST00000424937 WIZO95785 1651 aa41.64■■■■■ 4.26
PTCHD3P2-201ENST00000424937 RSF1Q96T23 1441 aaPredicted RBP41.45■■■■■ 4.23
PTCHD3P2-201ENST00000424937 TOP2AP11388 1531 aaKnown RBP41.16■■■■■ 4.18
PTCHD3P2-201ENST00000424937 NESP48681 1621 aa41.15■■■■■ 4.18
PTCHD3P2-201ENST00000424937 LAMC3Q9Y6N6 1575 aa41.05■■■■■ 4.16
PTCHD3P2-201ENST00000424937 ERCC6Q03468 1493 aa41.04■■■■■ 4.16
PTCHD3P2-201ENST00000424937 CADPSQ9ULU8 1353 aa40.81■■■■■ 4.12
PTCHD3P2-201ENST00000424937 KIF21AQ7Z4S6 1674 aa40.79■■■■■ 4.12
PTCHD3P2-201ENST00000424937 PDS5BQ9NTI5 1447 aa40.7■■■■■ 4.11
PTCHD3P2-201ENST00000424937 THOC2Q8NI27 1593 aaKnown RBP40.62■■■■■ 4.09
PTCHD3P2-201ENST00000424937 CCDC88BA6NC98 1476 aa40.6■■■■■ 4.09
PTCHD3P2-201ENST00000424937 CUX2O14529 1486 aa40.6■■■■■ 4.09
PTCHD3P2-201ENST00000424937 CFTRP13569 1480 aa40.58■■■■■ 4.09
PTCHD3P2-201ENST00000424937 PRDM2Q13029 1718 aa40.5■■■■■ 4.07
PTCHD3P2-201ENST00000424937 FANCD2Q9BXW9 1451 aa40.41■■■■■ 4.06
PTCHD3P2-201ENST00000424937 CEP164Q9UPV0 1460 aa40.4■■■■■ 4.06
PTCHD3P2-201ENST00000424937 MRC2Q9UBG0 1479 aa40.35■■■■■ 4.05
PTCHD3P2-201ENST00000424937 SUPT5HO00267 1087 aaKnown RBP40.33■■■■■ 4.05
PTCHD3P2-201ENST00000424937 WDR62O43379 1518 aa40.24■■■■■ 4.03
PTCHD3P2-201ENST00000424937 URB2Q14146 1524 aaKnown RBP40.03■■■■■ 4
PTCHD3P2-201ENST00000424937 TOPBP1Q92547 1522 aa39.77■■■■□ 3.96
PTCHD3P2-201ENST00000424937 DNMBPQ6XZF7 1577 aa39.75■■■■□ 3.95
PTCHD3P2-201ENST00000424937 ABCC8Q09428 1581 aa39.72■■■■□ 3.95
PTCHD3P2-201ENST00000424937 IFT140Q96RY7 1462 aa39.52■■■■□ 3.92
PTCHD3P2-201ENST00000424937 CUX1P39880 1505 aa39.45■■■■□ 3.91
PTCHD3P2-201ENST00000424937 POLA1P09884 1462 aaPredicted RBP39.42■■■■□ 3.9
PTCHD3P2-201ENST00000424937 TARBP1Q13395 1621 aaKnown RBP39.38■■■■□ 3.89
PTCHD3P2-201ENST00000424937 ZNF608Q9ULD9 1512 aaPredicted RBP39.37■■■■□ 3.89
PTCHD3P2-201ENST00000424937 DNAJC5Q9H3Z4 198 aa39.37■■■■□ 3.89
PTCHD3P2-201ENST00000424937 FGD5Q6ZNL6 1462 aa39.33■■■■□ 3.89
PTCHD3P2-201ENST00000424937 EIF4G3O43432 1585 aaKnown RBP39.3■■■■□ 3.88
PTCHD3P2-201ENST00000424937 RAD54L2Q9Y4B4 1467 aa39.24■■■■□ 3.87
PTCHD3P2-201ENST00000424937 SOGA1O94964 1423 aa39.2■■■■□ 3.87
PTCHD3P2-201ENST00000424937 BIVM-ERCC5R4GMW8 1640 aa39.14■■■■□ 3.86
PTCHD3P2-201ENST00000424937 WRNQ14191 1432 aaPredicted RBP eCLIP39.12■■■■□ 3.85
PTCHD3P2-201ENST00000424937 WDR97A6NE52 1622 aa39.11■■■■□ 3.85
PTCHD3P2-201ENST00000424937 SYNJ1O43426 1573 aa39.11■■■■□ 3.85
PTCHD3P2-201ENST00000424937 AQRO60306 1485 aaKnown RBP eCLIP39.11■■■■□ 3.85
PTCHD3P2-201ENST00000424937 TOP2BQ02880 1626 aa39.1■■■■□ 3.85
PTCHD3P2-201ENST00000424937 TDRD9Q8NDG6 1382 aaKnown RBP39■■■■□ 3.83
PTCHD3P2-201ENST00000424937 ABCA10Q8WWZ4 1543 aa38.91■■■■□ 3.82
PTCHD3P2-201ENST00000424937 CHD1O14646 1710 aa38.89■■■■□ 3.82
PTCHD3P2-201ENST00000424937 PBRM1Q86U86 1689 aa38.87■■■■□ 3.81
PTCHD3P2-201ENST00000424937 ABCA5Q8WWZ7 1642 aa38.85■■■■□ 3.81
PTCHD3P2-201ENST00000424937 OSCARQ8IYS5 282 aa38.82■■■■□ 3.8
PTCHD3P2-201ENST00000424937 GRIN2BQ13224 1484 aa38.79■■■■□ 3.8
PTCHD3P2-201ENST00000424937 SNAPC4Q5SXM2 1469 aa38.79■■■■□ 3.8
PTCHD3P2-201ENST00000424937 GAPVD1Q14C86 1478 aa38.79■■■■□ 3.8
PTCHD3P2-201ENST00000424937 MAGI1Q96QZ7 1491 aaPredicted RBP38.72■■■■□ 3.79
PTCHD3P2-201ENST00000424937 FBLN2P98095 1184 aa38.64■■■■□ 3.78
PTCHD3P2-201ENST00000424937 SYNJ2O15056 1496 aa38.56■■■■□ 3.76
PTCHD3P2-201ENST00000424937 CHMP7Q8WUX9 453 aaPredicted RBP38.5■■■■□ 3.75
PTCHD3P2-201ENST00000424937 ADAMTS12P58397 1594 aa38.49■■■■□ 3.75
PTCHD3P2-201ENST00000424937 ERICH3Q5RHP9 1530 aa38.46■■■■□ 3.75
PTCHD3P2-201ENST00000424937 RIMBP3CA6NJZ7 1639 aa38.38■■■■□ 3.74
PTCHD3P2-201ENST00000424937 RIMBP3BA6NNM3 1639 aa38.38■■■■□ 3.74
PTCHD3P2-201ENST00000424937 RIMBP3Q9UFD9 1639 aa38.38■■■■□ 3.74
PTCHD3P2-201ENST00000424937 CLASP1Q7Z460 1538 aa38.35■■■■□ 3.73
PTCHD3P2-201ENST00000424937 FHAD1B1AJZ9 1412 aa38.32■■■■□ 3.73
PTCHD3P2-201ENST00000424937 GRIN2AQ12879 1464 aa38.32■■■■□ 3.72
PTCHD3P2-201ENST00000424937 ARHGEF11O15085 1522 aa38.31■■■■□ 3.72
PTCHD3P2-201ENST00000424937 KIF27Q86VH2 1401 aa38.29■■■■□ 3.72
PTCHD3P2-201ENST00000424937 CEP170Q5SW79 1584 aa38.18■■■■□ 3.7
PTCHD3P2-201ENST00000424937 CUL7Q14999 1698 aa38.17■■■■□ 3.7
PTCHD3P2-201ENST00000424937 TRIM41Q8WV44 630 aa38.13■■■■□ 3.69
PTCHD3P2-201ENST00000424937 NUP160Q12769 1436 aa38.12■■■■□ 3.69
PTCHD3P2-201ENST00000424937 IGF1RP08069 1367 aa38.08■■■■□ 3.69
PTCHD3P2-201ENST00000424937 ARAP1Q96P48 1450 aa37.99■■■■□ 3.67
PTCHD3P2-201ENST00000424937 RUSC2Q8N2Y8 1516 aa37.94■■■■□ 3.66
PTCHD3P2-201ENST00000424937 SHROOM2Q13796 1616 aa37.92■■■■□ 3.66
PTCHD3P2-201ENST00000424937 CARMIL1Q5VZK9 1371 aa37.9■■■■□ 3.66
PTCHD3P2-201ENST00000424937 CYB5RLQ6IPT4 315 aa37.86■■■■□ 3.65
PTCHD3P2-201ENST00000424937 ERCC6L2Q5T890 1561 aa37.83■■■■□ 3.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms