Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.16■■■□□ 2.74
NKX2-4Q9H2Z4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
NKX2-4Q9H2Z4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.13■■■□□ 2.73
NKX2-4Q9H2Z4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
NKX2-4Q9H2Z4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
NKX2-4Q9H2Z4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.11■■■□□ 2.73
NKX2-4Q9H2Z4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
NKX2-4Q9H2Z4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
NKX2-4Q9H2Z4 RARRES2P7-201ENST00000567349 469 ntBASIC32.06■■■□□ 2.72
NKX2-4Q9H2Z4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.95■■■□□ 2.71
NKX2-4Q9H2Z4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.93■■■□□ 2.7
NKX2-4Q9H2Z4 AC097358.2-201ENST00000607541 1159 ntBASIC31.86■■■□□ 2.69
NKX2-4Q9H2Z4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
NKX2-4Q9H2Z4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.8■■■□□ 2.68
NKX2-4Q9H2Z4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.79■■■□□ 2.68
NKX2-4Q9H2Z4 RPS2P35-201ENST00000443417 897 ntBASIC31.79■■■□□ 2.68
NKX2-4Q9H2Z4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NKX2-4Q9H2Z4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
NKX2-4Q9H2Z4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NKX2-4Q9H2Z4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.72■■■□□ 2.67
NKX2-4Q9H2Z4 AC136428.2-201ENST00000563187 214 ntBASIC31.72■■■□□ 2.67
NKX2-4Q9H2Z4 SETD8P1-201ENST00000623146 1180 ntBASIC31.67■■■□□ 2.66
NKX2-4Q9H2Z4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
NKX2-4Q9H2Z4 SUZ12P1-203ENST00000578195 985 ntBASIC31.66■■■□□ 2.66
NKX2-4Q9H2Z4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NKX2-4Q9H2Z4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.64■■■□□ 2.66
NKX2-4Q9H2Z4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NKX2-4Q9H2Z4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.6■■■□□ 2.65
NKX2-4Q9H2Z4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
NKX2-4Q9H2Z4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.58■■■□□ 2.65
NKX2-4Q9H2Z4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NKX2-4Q9H2Z4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
NKX2-4Q9H2Z4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.52■■■□□ 2.64
NKX2-4Q9H2Z4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
NKX2-4Q9H2Z4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
NKX2-4Q9H2Z4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.5■■■□□ 2.63
NKX2-4Q9H2Z4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
NKX2-4Q9H2Z4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.49■■■□□ 2.63
NKX2-4Q9H2Z4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.48■■■□□ 2.63
NKX2-4Q9H2Z4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.46■■■□□ 2.63
NKX2-4Q9H2Z4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.45■■■□□ 2.63
NKX2-4Q9H2Z4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
NKX2-4Q9H2Z4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NKX2-4Q9H2Z4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.41■■■□□ 2.62
NKX2-4Q9H2Z4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NKX2-4Q9H2Z4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.38■■■□□ 2.61
NKX2-4Q9H2Z4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.37■■■□□ 2.61
NKX2-4Q9H2Z4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
NKX2-4Q9H2Z4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.36■■■□□ 2.61
NKX2-4Q9H2Z4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.35■■■□□ 2.61
NKX2-4Q9H2Z4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NKX2-4Q9H2Z4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.24■■■□□ 2.59
NKX2-4Q9H2Z4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NKX2-4Q9H2Z4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NKX2-4Q9H2Z4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
NKX2-4Q9H2Z4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
NKX2-4Q9H2Z4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.19■■■□□ 2.58
NKX2-4Q9H2Z4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.18■■■□□ 2.58
NKX2-4Q9H2Z4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.18■■■□□ 2.58
NKX2-4Q9H2Z4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.16■■■□□ 2.58
NKX2-4Q9H2Z4 AL162393.1-201ENST00000437852 946 ntBASIC31.15■■■□□ 2.58
NKX2-4Q9H2Z4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NKX2-4Q9H2Z4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
NKX2-4Q9H2Z4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NKX2-4Q9H2Z4 CAHM-201ENST00000604200 896 ntBASIC31.08■■■□□ 2.57
NKX2-4Q9H2Z4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NKX2-4Q9H2Z4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
NKX2-4Q9H2Z4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
NKX2-4Q9H2Z4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.06■■■□□ 2.56
NKX2-4Q9H2Z4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.06■■■□□ 2.56
NKX2-4Q9H2Z4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NKX2-4Q9H2Z4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NKX2-4Q9H2Z4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NKX2-4Q9H2Z4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NKX2-4Q9H2Z4 AP006261.1-201ENST00000584783 668 ntBASIC30.99■■■□□ 2.55
NKX2-4Q9H2Z4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.94■■■□□ 2.54
NKX2-4Q9H2Z4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
NKX2-4Q9H2Z4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.9■■■□□ 2.54
NKX2-4Q9H2Z4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
NKX2-4Q9H2Z4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NKX2-4Q9H2Z4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.88■■■□□ 2.53
NKX2-4Q9H2Z4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
NKX2-4Q9H2Z4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
NKX2-4Q9H2Z4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.87■■■□□ 2.53
NKX2-4Q9H2Z4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
NKX2-4Q9H2Z4 MIR7108-201ENST00000614319 87 ntBASIC30.87■■■□□ 2.53
NKX2-4Q9H2Z4 AL391121.1-201ENST00000607967 1349 ntBASIC30.85■■■□□ 2.53
NKX2-4Q9H2Z4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
NKX2-4Q9H2Z4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
NKX2-4Q9H2Z4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NKX2-4Q9H2Z4 ABHD17AP4-201ENST00000411545 909 ntBASIC30.82■■■□□ 2.52
NKX2-4Q9H2Z4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
NKX2-4Q9H2Z4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
NKX2-4Q9H2Z4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.76■■■□□ 2.51
NKX2-4Q9H2Z4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.51
NKX2-4Q9H2Z4 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.75■■■□□ 2.51
NKX2-4Q9H2Z4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NKX2-4Q9H2Z4 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.72■■■□□ 2.51
NKX2-4Q9H2Z4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NKX2-4Q9H2Z4 AC145285.7-201ENST00000614819 1539 ntBASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms