Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 STXBP2-217ENST00000599737 1523 ntTSL 516.15■□□□□ 0.181e-10■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-209ENST00000518879 820 ntTSL 521.22■□□□□ 0.991e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-219ENST00000521223 587 ntTSL 421.14■□□□□ 0.971e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.641e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.451e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.72■□□□□ 0.431e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.331e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.261e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-220ENST00000522250 1647 ntTSL 5 BASIC13.38□□□□□ -0.271e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-215ENST00000519824 3798 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.411e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.271e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC6.25□□□□□ -1.411e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.95□□□□□ -1.461e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.661e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-213ENST00000519142 696 ntTSL 54.6□□□□□ -1.671e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-225ENST00000523288 4552 ntTSL 23.56□□□□□ -1.841e-7■■□□□ 12.6
LIN28BQ6ZN17 FAM49B-222ENST00000522702 544 ntTSL 43.45□□□□□ -1.861e-7■■□□□ 12.6
LIN28BQ6ZN17 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC12.03□□□□□ -0.481e-6■■□□□ 12.6
LIN28BQ6ZN17 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13□□□□□ -0.335e-28■■□□□ 12.6
LIN28BQ6ZN17 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.14■■□□□ 1.788e-9■■□□□ 12.6
LIN28BQ6ZN17 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.588e-9■■□□□ 12.6
LIN28BQ6ZN17 SLC25A1-205ENST00000470922 1598 ntTSL 224.46■■□□□ 1.518e-9■■□□□ 12.6
LIN28BQ6ZN17 RPS6KA1-212ENST00000526040 500 ntTSL 530.22■■■□□ 2.438e-7■■□□□ 12.5
LIN28BQ6ZN17 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.938e-7■■□□□ 12.5
LIN28BQ6ZN17 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.59e-10■■□□□ 12.5
LIN28BQ6ZN17 AP1S1-203ENST00000443943 741 ntTSL 323.95■■□□□ 1.429e-10■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.428e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC22.69■■□□□ 1.228e-7■■□□□ 12.5
LIN28BQ6ZN17 MIF-203ENST00000498385 435 ntTSL 222.52■■□□□ 1.28e-7■■□□□ 12.5
LIN28BQ6ZN17 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.91■■□□□ 1.18e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-210ENST00000425265 866 ntTSL 321.83■■□□□ 1.098e-7■■□□□ 12.5
LIN28BQ6ZN17 VARS-220ENST00000461874 845 ntTSL 521.6■■□□□ 1.059e-7■■□□□ 12.5
LIN28BQ6ZN17 DENND4A-208ENST00000568515 2655 ntTSL 220.34■□□□□ 0.858e-7■■□□□ 12.5
LIN28BQ6ZN17 MIF-202ENST00000465752 589 ntTSL 1 (best)20.33■□□□□ 0.858e-7■■□□□ 12.5
LIN28BQ6ZN17 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.758e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-218ENST00000528831 463 ntTSL 319.74■□□□□ 0.758e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.8■□□□□ 0.68e-7■■□□□ 12.5
LIN28BQ6ZN17 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.68■□□□□ 0.588e-7■■□□□ 12.5
LIN28BQ6ZN17 OXA1L-204ENST00000431881 889 ntTSL 318.66■□□□□ 0.584e-11■■□□□ 12.5
LIN28BQ6ZN17 DAP3-212ENST00000471214 1287 ntTSL 517.96■□□□□ 0.478e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-207ENST00000474934 857 ntTSL 417.8■□□□□ 0.448e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.448e-7■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-212ENST00000601449 1918 ntTSL 517.66■□□□□ 0.428e-7■■□□□ 12.5
LIN28BQ6ZN17 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.418e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.388e-7■■□□□ 12.5
LIN28BQ6ZN17 DENND4A-206ENST00000564674 3389 ntTSL 1 (best)17.37■□□□□ 0.378e-7■■□□□ 12.5
LIN28BQ6ZN17 AL603832.3-205ENST00000606954 680 ntTSL 217.14■□□□□ 0.338e-7■■□□□ 12.5
LIN28BQ6ZN17 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.298e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-215ENST00000529454 544 ntTSL 516.74■□□□□ 0.278e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-219ENST00000534717 574 ntTSL 316.66■□□□□ 0.268e-7■■□□□ 12.5
LIN28BQ6ZN17 MOB2-206ENST00000531976 3174 ntTSL 1 (best)16.48■□□□□ 0.238e-7■■□□□ 12.5
LIN28BQ6ZN17 OXA1L-205ENST00000442110 691 ntTSL 516.22■□□□□ 0.194e-11■■□□□ 12.5
LIN28BQ6ZN17 VARS-226ENST00000483275 450 ntTSL 316.16■□□□□ 0.189e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-216ENST00000484280 891 ntTSL 515.5■□□□□ 0.078e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-213ENST00000473074 943 ntTSL 515.46■□□□□ 0.078e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-214ENST00000527264 530 ntTSL 415.45■□□□□ 0.068e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-205ENST00000369636 786 ntTSL 2 BASIC15.15■□□□□ 0.028e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.028e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-215ENST00000484054 521 ntTSL 515.15■□□□□ 0.028e-7■■□□□ 12.5
LIN28BQ6ZN17 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.83□□□□□ -0.048e-7■■□□□ 12.5
LIN28BQ6ZN17 KDM3B-206ENST00000509468 576 ntTSL 514.46□□□□□ -0.098e-7■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC14.33□□□□□ -0.118e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-209ENST00000414971 470 ntTSL 314.32□□□□□ -0.128e-7■■□□□ 12.5
LIN28BQ6ZN17 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.158e-7■■□□□ 12.5
LIN28BQ6ZN17 AL603832.3-202ENST00000607158 807 ntTSL 513.99□□□□□ -0.178e-7■■□□□ 12.5
LIN28BQ6ZN17 SKIV2L-204ENST00000465703 4507 ntTSL 1 (best)13.87□□□□□ -0.198e-7■■□□□ 12.5
LIN28BQ6ZN17 OXA1L-206ENST00000473744 824 ntTSL 313.42□□□□□ -0.264e-11■■□□□ 12.5
LIN28BQ6ZN17 AL603832.3-204ENST00000605933 744 ntAPPRIS ALT2 TSL 513.07□□□□□ -0.328e-7■■□□□ 12.5
LIN28BQ6ZN17 AL603832.3-203ENST00000606505 813 ntAPPRIS P5 TSL 5 BASIC13.07□□□□□ -0.328e-7■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-203ENST00000595164 2404 ntTSL 213.03□□□□□ -0.328e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.93□□□□□ -0.348e-7■■□□□ 12.5
LIN28BQ6ZN17 AL603832.3-201ENST00000471038 792 ntTSL 212.41□□□□□ -0.428e-7■■□□□ 12.5
LIN28BQ6ZN17 SKIV2L-203ENST00000461915 691 ntTSL 512.3□□□□□ -0.448e-7■■□□□ 12.5
LIN28BQ6ZN17 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.458e-7■■□□□ 12.5
LIN28BQ6ZN17 RHOC-211ENST00000436685 517 ntTSL 511.77□□□□□ -0.538e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-220ENST00000531382 2359 ntTSL 2 BASIC11.69□□□□□ -0.548e-7■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-204ENST00000595443 2122 ntTSL 211.65□□□□□ -0.558e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-219ENST00000531113 2089 ntTSL 211.53□□□□□ -0.568e-7■■□□□ 12.5
LIN28BQ6ZN17 SKIV2L-208ENST00000474839 3378 ntTSL 211.44□□□□□ -0.588e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-222ENST00000496863 742 ntTSL 211.25□□□□□ -0.618e-7■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-206ENST00000597731 3094 ntTSL 210.87□□□□□ -0.678e-7■■□□□ 12.5
LIN28BQ6ZN17 TGFBR1-209ENST00000552516 5933 ntTSL 1 (best) BASIC10.85□□□□□ -0.678e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-201ENST00000366866 592 ntTSL 410.7□□□□□ -0.78e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-211ENST00000470830 439 ntTSL 310.67□□□□□ -0.78e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-205ENST00000462002 716 ntTSL 310.5□□□□□ -0.738e-7■■□□□ 12.5
LIN28BQ6ZN17 SKIV2L-201ENST00000375394 3894 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.748e-7■■□□□ 12.5
LIN28BQ6ZN17 HNRNPL-202ENST00000388749 1952 ntTSL 510.44□□□□□ -0.748e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-202ENST00000374163 3202 ntTSL 210.27□□□□□ -0.778e-7■■□□□ 12.5
LIN28BQ6ZN17 RPS6KA1-216ENST00000530003 3023 ntTSL 5 BASIC10.14□□□□□ -0.798e-7■■□□□ 12.5
LIN28BQ6ZN17 ASH2L-205ENST00000518186 575 ntTSL 49.38□□□□□ -0.918e-7■■□□□ 12.5
LIN28BQ6ZN17 CHD6-201ENST00000309279 1635 ntTSL 1 (best) BASIC8.93□□□□□ -0.988e-7■■□□□ 12.5
LIN28BQ6ZN17 CHD6-205ENST00000440697 1635 ntTSL 58.93□□□□□ -0.988e-7■■□□□ 12.5
LIN28BQ6ZN17 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC8.91□□□□□ -0.989e-10■■□□□ 12.5
LIN28BQ6ZN17 CBX5-205ENST00000552562 675 ntTSL 48.73□□□□□ -1.011e-12■■□□□ 12.5
LIN28BQ6ZN17 DCAF6-211ENST00000489398 1727 ntTSL 28.26□□□□□ -1.098e-7■■□□□ 12.5
LIN28BQ6ZN17 DCAF6-210ENST00000478668 494 ntTSL 27.85□□□□□ -1.158e-7■■□□□ 12.5
LIN28BQ6ZN17 THEM7P-201ENST00000419556 672 ntBASIC7.69□□□□□ -1.188e-7■■□□□ 12.5
LIN28BQ6ZN17 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.279e-10■■□□□ 12.5
LIN28BQ6ZN17 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.55□□□□□ -1.368e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-226ENST00000608852 384 ntTSL 36.48□□□□□ -1.378e-7■■□□□ 12.5
Retrieved 100 of 21,972 protein–RNA pairs in 631.4 ms