RNA–Protein interactions for RNA: ENST00000483275.1

VARS-226, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-226ENST00000483275 NISCHQ9Y2I1 1504 aa35.17■■■■□ 3.22
VARS-226ENST00000483275 ABCC9O60706 1549 aa31.77■■■□□ 2.68
VARS-226ENST00000483275 CCDC180Q9P1Z9 1646 aa31.64■■■□□ 2.65
VARS-226ENST00000483275 RB1CC1Q8TDY2 1594 aa30.12■■■□□ 2.41
VARS-226ENST00000483275 NACADO15069 1562 aa29.85■■■□□ 2.37
VARS-226ENST00000483275 DNAJC5BQ9UF47 199 aa29.83■■■□□ 2.37
VARS-226ENST00000483275 DCAF8L2P0C7V8 631 aa29.73■■■□□ 2.35
VARS-226ENST00000483275 UNC13AQ9UPW8 1703 aa29.62■■■□□ 2.33
VARS-226ENST00000483275 PABPN1Q86U42 306 aaKnown RBP eCLIP29.53■■■□□ 2.32
VARS-226ENST00000483275 MYO15BQ96JP2 1530 aa29.33■■■□□ 2.29
VARS-226ENST00000483275 BICRAQ9NZM4 1560 aa29.33■■■□□ 2.29
VARS-226ENST00000483275 ZCCHC6Q5VYS8 1495 aaKnown RBP29.16■■■□□ 2.26
VARS-226ENST00000483275 DCAF1Q9Y4B6 1507 aa28.96■■■□□ 2.23
VARS-226ENST00000483275 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
VARS-226ENST00000483275 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
VARS-226ENST00000483275 CC2D2AQ9P2K1 1620 aa28.69■■■□□ 2.18
VARS-226ENST00000483275 EIF4G1Q04637 1599 aaKnown RBP28.58■■■□□ 2.17
VARS-226ENST00000483275 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
VARS-226ENST00000483275 SMARCA4P51532 1647 aa27.52■■■□□ 2
VARS-226ENST00000483275 NCAPD3P42695 1498 aa27.52■■■□□ 2
VARS-226ENST00000483275 ATAD2BQ9ULI0 1458 aa27.49■■□□□ 1.99
VARS-226ENST00000483275 SMARCA2P51531 1590 aa27.4■■□□□ 1.98
VARS-226ENST00000483275 ERCC6Q03468 1493 aa27.39■■□□□ 1.98
VARS-226ENST00000483275 HMGXB3Q12766 1538 aa27.38■■□□□ 1.97
VARS-226ENST00000483275 DNAJC5Q9H3Z4 198 aa27.33■■□□□ 1.97
VARS-226ENST00000483275 BAZ1AQ9NRL2 1556 aaPredicted RBP27.3■■□□□ 1.96
VARS-226ENST00000483275 NESP48681 1621 aa27.3■■□□□ 1.96
VARS-226ENST00000483275 CUX2O14529 1486 aa27.29■■□□□ 1.96
VARS-226ENST00000483275 BAZ1BQ9UIG0 1483 aaKnown RBP27.25■■□□□ 1.95
VARS-226ENST00000483275 MROH2BQ7Z745 1585 aa27.17■■□□□ 1.94
VARS-226ENST00000483275 PEG3Q9GZU2 1588 aa27.17■■□□□ 1.94
VARS-226ENST00000483275 THOC2Q8NI27 1593 aaKnown RBP27.04■■□□□ 1.92
VARS-226ENST00000483275 KIF21AQ7Z4S6 1674 aa27■■□□□ 1.91
VARS-226ENST00000483275 LAMC3Q9Y6N6 1575 aa26.98■■□□□ 1.91
VARS-226ENST00000483275 WIZO95785 1651 aa26.9■■□□□ 1.9
VARS-226ENST00000483275 PDS5BQ9NTI5 1447 aa26.77■■□□□ 1.88
VARS-226ENST00000483275 CADPSQ9ULU8 1353 aa26.69■■□□□ 1.86
VARS-226ENST00000483275 MRC2Q9UBG0 1479 aa26.62■■□□□ 1.85
VARS-226ENST00000483275 WDR62O43379 1518 aa26.58■■□□□ 1.85
VARS-226ENST00000483275 CEP164Q9UPV0 1460 aa26.5■■□□□ 1.83
VARS-226ENST00000483275 RSF1Q96T23 1441 aaPredicted RBP26.5■■□□□ 1.83
VARS-226ENST00000483275 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
VARS-226ENST00000483275 TOP2AP11388 1531 aaKnown RBP26.46■■□□□ 1.83
VARS-226ENST00000483275 CFTRP13569 1480 aa26.4■■□□□ 1.82
VARS-226ENST00000483275 URB2Q14146 1524 aaKnown RBP26.3■■□□□ 1.8
VARS-226ENST00000483275 PRDM2Q13029 1718 aa26.28■■□□□ 1.8
VARS-226ENST00000483275 TRIM41Q8WV44 630 aa26.23■■□□□ 1.79
VARS-226ENST00000483275 CCDC88BA6NC98 1476 aa26.15■■□□□ 1.78
VARS-226ENST00000483275 ZNF608Q9ULD9 1512 aaPredicted RBP26.01■■□□□ 1.75
VARS-226ENST00000483275 OSCARQ8IYS5 282 aa25.97■■□□□ 1.75
VARS-226ENST00000483275 TOPBP1Q92547 1522 aa25.97■■□□□ 1.75
VARS-226ENST00000483275 IFT140Q96RY7 1462 aa25.93■■□□□ 1.74
VARS-226ENST00000483275 EIF4G3O43432 1585 aaKnown RBP25.9■■□□□ 1.74
VARS-226ENST00000483275 DNMBPQ6XZF7 1577 aa25.88■■□□□ 1.73
VARS-226ENST00000483275 RIMBP3CA6NJZ7 1639 aa25.85■■□□□ 1.73
VARS-226ENST00000483275 RIMBP3BA6NNM3 1639 aa25.85■■□□□ 1.73
VARS-226ENST00000483275 RIMBP3Q9UFD9 1639 aa25.85■■□□□ 1.73
VARS-226ENST00000483275 TARBP1Q13395 1621 aaKnown RBP25.78■■□□□ 1.72
VARS-226ENST00000483275 ABCC8Q09428 1581 aa25.77■■□□□ 1.72
VARS-226ENST00000483275 CHD1O14646 1710 aa25.77■■□□□ 1.72
VARS-226ENST00000483275 AQRO60306 1485 aaKnown RBP eCLIP25.72■■□□□ 1.717e-7■■■■■ 32.1
VARS-226ENST00000483275 ARHGEF11O15085 1522 aa25.71■■□□□ 1.71
VARS-226ENST00000483275 POLA1P09884 1462 aaPredicted RBP25.7■■□□□ 1.7
VARS-226ENST00000483275 RAD54L2Q9Y4B4 1467 aa25.65■■□□□ 1.7
VARS-226ENST00000483275 FGD5Q6ZNL6 1462 aa25.55■■□□□ 1.68
VARS-226ENST00000483275 CUX1P39880 1505 aa25.54■■□□□ 1.68
VARS-226ENST00000483275 FBLN2P98095 1184 aa25.54■■□□□ 1.68
VARS-226ENST00000483275 TDRD9Q8NDG6 1382 aaKnown RBP25.54■■□□□ 1.68
VARS-226ENST00000483275 SOGA1O94964 1423 aa25.53■■□□□ 1.68
VARS-226ENST00000483275 SNAPC4Q5SXM2 1469 aa25.48■■□□□ 1.67
VARS-226ENST00000483275 ARAP1Q96P48 1450 aa25.47■■□□□ 1.67
VARS-226ENST00000483275 CYB5RLQ6IPT4 315 aa25.45■■□□□ 1.66
VARS-226ENST00000483275 WDR97A6NE52 1622 aa25.44■■□□□ 1.66
VARS-226ENST00000483275 PBRM1Q86U86 1689 aa25.38■■□□□ 1.65
VARS-226ENST00000483275 CLASP1Q7Z460 1538 aa25.37■■□□□ 1.65
VARS-226ENST00000483275 MAGI1Q96QZ7 1491 aaPredicted RBP25.33■■□□□ 1.65
VARS-226ENST00000483275 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
VARS-226ENST00000483275 GRIN2BQ13224 1484 aa25.32■■□□□ 1.64
VARS-226ENST00000483275 SYNJ1O43426 1573 aa25.31■■□□□ 1.64
VARS-226ENST00000483275 CHMP7Q8WUX9 453 aaPredicted RBP25.27■■□□□ 1.64
VARS-226ENST00000483275 SYNJ2O15056 1496 aa25.26■■□□□ 1.63
VARS-226ENST00000483275 ABCA5Q8WWZ7 1642 aa25.25■■□□□ 1.63
VARS-226ENST00000483275 GAPVD1Q14C86 1478 aa25.24■■□□□ 1.63
VARS-226ENST00000483275 TRHP20396 242 aaPredicted RBP25.21■■□□□ 1.63
VARS-226ENST00000483275 ABCA10Q8WWZ4 1543 aa25.19■■□□□ 1.62
VARS-226ENST00000483275 BIVM-ERCC5R4GMW8 1640 aa25.1■■□□□ 1.61
VARS-226ENST00000483275 ADAMTS12P58397 1594 aa25.08■■□□□ 1.61
VARS-226ENST00000483275 TOP2BQ02880 1626 aa25.08■■□□□ 1.6
VARS-226ENST00000483275 ERCC6L2Q5T890 1561 aa25.05■■□□□ 1.6
VARS-226ENST00000483275 WRNQ14191 1432 aaPredicted RBP eCLIP25.04■■□□□ 1.6
VARS-226ENST00000483275 GRIN2AQ12879 1464 aa25.03■■□□□ 1.6
VARS-226ENST00000483275 CEP170Q5SW79 1584 aa25.02■■□□□ 1.6
VARS-226ENST00000483275 NUP160Q12769 1436 aa24.92■■□□□ 1.58
VARS-226ENST00000483275 SHROOM2Q13796 1616 aa24.89■■□□□ 1.57
VARS-226ENST00000483275 FHAD1B1AJZ9 1412 aa24.88■■□□□ 1.57
VARS-226ENST00000483275 ERICH3Q5RHP9 1530 aa24.87■■□□□ 1.57
VARS-226ENST00000483275 RUSC2Q8N2Y8 1516 aa24.74■■□□□ 1.55
VARS-226ENST00000483275 PRG4Q92954 1404 aaPredicted RBP24.71■■□□□ 1.55
VARS-226ENST00000483275 KIF13AQ9H1H9 1805 aa24.67■■□□□ 1.54
VARS-226ENST00000483275 JPH4Q96JJ6 628 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms