RNA–Protein interactions for RNA: ENST00000568515.1

DENND4A-208, Transcript of DENN domain containing 4A, humanhuman

TSL 2

Gene DENND4A, Length 2,655 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND4A-208ENST00000568515 NISCHQ9Y2I1 1504 aa43.29■■■■■ 4.52
DENND4A-208ENST00000568515 SHROOM4Q9ULL8 1493 aa37.29■■■■□ 3.56
DENND4A-208ENST00000568515 SUPT5HO00267 1087 aaKnown RBP36.84■■■■□ 3.49
DENND4A-208ENST00000568515 ZCCHC6Q5VYS8 1495 aaKnown RBP36.71■■■■□ 3.47
DENND4A-208ENST00000568515 CCDC180Q9P1Z9 1646 aa36.53■■■■□ 3.44
DENND4A-208ENST00000568515 CHIC1Q5VXU3 224 aa36.09■■■■□ 3.37
DENND4A-208ENST00000568515 MYO15BQ96JP2 1530 aa36.06■■■■□ 3.36
DENND4A-208ENST00000568515 HRCP23327 699 aa35.89■■■■□ 3.34
DENND4A-208ENST00000568515 DCAF8L2P0C7V8 631 aa35.77■■■■□ 3.32
DENND4A-208ENST00000568515 DCAF1Q9Y4B6 1507 aa35.51■■■■□ 3.28
DENND4A-208ENST00000568515 PCGF6Q9BYE7 350 aa35.49■■■■□ 3.27
DENND4A-208ENST00000568515 LOC105371045A0A1W2PR82 267 aa35.05■■■■□ 3.2
DENND4A-208ENST00000568515 PPARGC1BQ86YN6 1023 aaKnown RBP35.02■■■■□ 3.2
DENND4A-208ENST00000568515 ABCC9O60706 1549 aa34.73■■■■□ 3.15
DENND4A-208ENST00000568515 TRIM26Q12899 539 aaPredicted RBP34.72■■■■□ 3.15
DENND4A-208ENST00000568515 RSF1Q96T23 1441 aaPredicted RBP34.48■■■■□ 3.11
DENND4A-208ENST00000568515 SCRIBQ14160 1630 aa34.35■■■■□ 3.09
DENND4A-208ENST00000568515 TRIM41Q8WV44 630 aa34.28■■■■□ 3.08
DENND4A-208ENST00000568515 ZEB1P37275 1124 aaPredicted RBP34.21■■■■□ 3.07
DENND4A-208ENST00000568515 RB1CC1Q8TDY2 1594 aa34.17■■■■□ 3.06
DENND4A-208ENST00000568515 FAM9AQ8IZU1 332 aaPredicted RBP34.02■■■■□ 3.04
DENND4A-208ENST00000568515 CECR2Q9BXF3 1484 aa33.75■■■□□ 2.99
DENND4A-208ENST00000568515 EHMT2Q96KQ7 1210 aa33.7■■■□□ 2.99
DENND4A-208ENST00000568515 MROH2BQ7Z745 1585 aa33.69■■■□□ 2.98
DENND4A-208ENST00000568515 NACADO15069 1562 aa33.68■■■□□ 2.98
DENND4A-208ENST00000568515 WIZO95785 1651 aa33.53■■■□□ 2.96
DENND4A-208ENST00000568515 SCAF1Q9H7N4 1312 aaKnown RBP33.37■■■□□ 2.93
DENND4A-208ENST00000568515 BAZ1AQ9NRL2 1556 aaPredicted RBP33.36■■■□□ 2.93
DENND4A-208ENST00000568515 PELP1Q8IZL8 1130 aaKnown RBP33.34■■■□□ 2.93
DENND4A-208ENST00000568515 EIF4G1Q04637 1599 aaKnown RBP33.3■■■□□ 2.92
DENND4A-208ENST00000568515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.2■■■□□ 2.91
DENND4A-208ENST00000568515 CCER1Q8TC90 406 aaPredicted RBP33.16■■■□□ 2.9
DENND4A-208ENST00000568515 WRNQ14191 1432 aaPredicted RBP eCLIP33.01■■■□□ 2.878e-8■■■■■ 53.5
DENND4A-208ENST00000568515 TOP2AP11388 1531 aaKnown RBP33■■■□□ 2.87
DENND4A-208ENST00000568515 ABCC8Q09428 1581 aa32.97■■■□□ 2.87
DENND4A-208ENST00000568515 CCDC88BA6NC98 1476 aa32.96■■■□□ 2.87
DENND4A-208ENST00000568515 ACIN1Q9UKV3 1341 aaKnown RBP32.9■■■□□ 2.86
DENND4A-208ENST00000568515 CEP162Q5TB80 1403 aa32.88■■■□□ 2.85
DENND4A-208ENST00000568515 SMARCA4P51532 1647 aa32.85■■■□□ 2.85
DENND4A-208ENST00000568515 SMARCA2P51531 1590 aa32.85■■■□□ 2.85
DENND4A-208ENST00000568515 DIEXFQ68CQ4 756 aaKnown RBP32.82■■■□□ 2.84
DENND4A-208ENST00000568515 TNIKQ9UKE5 1360 aa32.81■■■□□ 2.84
DENND4A-208ENST00000568515 NEUROD1Q13562 356 aa32.8■■■□□ 2.84
DENND4A-208ENST00000568515 SOGA1O94964 1423 aa32.78■■■□□ 2.84
DENND4A-208ENST00000568515 TTBK1Q5TCY1 1321 aaPredicted RBP32.76■■■□□ 2.83
DENND4A-208ENST00000568515 EEA1Q15075 1411 aa32.71■■■□□ 2.83
DENND4A-208ENST00000568515 CSRNP3Q8WYN3 585 aa32.67■■■□□ 2.82
DENND4A-208ENST00000568515 CENPBP07199 599 aaPredicted RBP32.64■■■□□ 2.81
DENND4A-208ENST00000568515 RUSC2Q8N2Y8 1516 aa32.6■■■□□ 2.81
DENND4A-208ENST00000568515 UBTFP17480 764 aaKnown RBP32.59■■■□□ 2.81
DENND4A-208ENST00000568515 UNC13AQ9UPW8 1703 aa32.55■■■□□ 2.8
DENND4A-208ENST00000568515 GTF3C3Q9Y5Q9 886 aa32.52■■■□□ 2.8
DENND4A-208ENST00000568515 GOLGA3Q08378 1498 aa32.51■■■□□ 2.8
DENND4A-208ENST00000568515 ZNF316A6NFI3 1004 aaPredicted RBP32.45■■■□□ 2.79
DENND4A-208ENST00000568515 CEP164Q9UPV0 1460 aa32.27■■■□□ 2.76
DENND4A-208ENST00000568515 KIF21BO75037 1637 aa32.23■■■□□ 2.75
DENND4A-208ENST00000568515 PEG3Q9GZU2 1588 aa32.19■■■□□ 2.74
DENND4A-208ENST00000568515 SYNJ1O43426 1573 aa32.18■■■□□ 2.74
DENND4A-208ENST00000568515 HNRNPUL2Q1KMD3 747 aaKnown RBP32.17■■■□□ 2.74
DENND4A-208ENST00000568515 CLIP1P30622 1438 aa32.16■■■□□ 2.74
DENND4A-208ENST00000568515 BICRAQ9NZM4 1560 aa32.12■■■□□ 2.73
DENND4A-208ENST00000568515 PABPN1Q86U42 306 aaKnown RBP eCLIP32.11■■■□□ 2.73
DENND4A-208ENST00000568515 VPS8Q8N3P4 1428 aa32.1■■■□□ 2.73
DENND4A-208ENST00000568515 BAZ1BQ9UIG0 1483 aaKnown RBP32.04■■■□□ 2.72
DENND4A-208ENST00000568515 MIER1Q8N108 512 aa32.04■■■□□ 2.72
DENND4A-208ENST00000568515 YTHDC1Q96MU7 727 aaKnown RBP32.03■■■□□ 2.72
DENND4A-208ENST00000568515 APLP2Q06481 763 aa31.98■■■□□ 2.71
DENND4A-208ENST00000568515 RAPGEF2Q9Y4G8 1499 aa31.96■■■□□ 2.71
DENND4A-208ENST00000568515 ATAD2BQ9ULI0 1458 aa31.89■■■□□ 2.7
DENND4A-208ENST00000568515 MYT1Q01538 1121 aa31.8■■■□□ 2.68
DENND4A-208ENST00000568515 RANGAP1P46060 587 aaPredicted RBP31.78■■■□□ 2.68
DENND4A-208ENST00000568515 TOP2BQ02880 1626 aa31.74■■■□□ 2.67
DENND4A-208ENST00000568515 CLSPNQ9HAW4 1339 aa31.71■■■□□ 2.67
DENND4A-208ENST00000568515 DHX57Q6P158 1386 aaKnown RBP31.63■■■□□ 2.65
DENND4A-208ENST00000568515 ERICH3Q5RHP9 1530 aa31.62■■■□□ 2.65
DENND4A-208ENST00000568515 BIVM-ERCC5R4GMW8 1640 aa31.61■■■□□ 2.65
DENND4A-208ENST00000568515 PRXQ9BXM0 1461 aa31.59■■■□□ 2.65
DENND4A-208ENST00000568515 ARAP1Q96P48 1450 aa31.58■■■□□ 2.65
DENND4A-208ENST00000568515 KANK4Q5T7N3 995 aaPredicted RBP31.51■■■□□ 2.63
DENND4A-208ENST00000568515 RRBP1Q9P2E9 1410 aaKnown RBP31.43■■■□□ 2.62
DENND4A-208ENST00000568515 CUX2O14529 1486 aa31.34■■■□□ 2.61
DENND4A-208ENST00000568515 CUX1P39880 1505 aa31.32■■■□□ 2.6
DENND4A-208ENST00000568515 KIF27Q86VH2 1401 aa31.32■■■□□ 2.6
DENND4A-208ENST00000568515 CCNB3Q8WWL7 1395 aa31.27■■■□□ 2.6
DENND4A-208ENST00000568515 ARHGAP35Q9NRY4 1499 aa31.22■■■□□ 2.59
DENND4A-208ENST00000568515 SUPT16HQ9Y5B9 1047 aaKnown RBP31.22■■■□□ 2.59
DENND4A-208ENST00000568515 HMGXB3Q12766 1538 aa31.19■■■□□ 2.58
DENND4A-208ENST00000568515 NCAPD3P42695 1498 aa31.18■■■□□ 2.58
DENND4A-208ENST00000568515 ITGAEP38570 1179 aa31.11■■■□□ 2.57
DENND4A-208ENST00000568515 CFTRP13569 1480 aa31.09■■■□□ 2.57
DENND4A-208ENST00000568515 RAB3GAP2Q9H2M9 1393 aa31.06■■■□□ 2.56
DENND4A-208ENST00000568515 MAPKBP1O60336 1514 aa31.01■■■□□ 2.55
DENND4A-208ENST00000568515 MAP3K1Q13233 1512 aa30.99■■■□□ 2.55
DENND4A-208ENST00000568515 TIAM1Q13009 1591 aa30.97■■■□□ 2.55
DENND4A-208ENST00000568515 IGF1RP08069 1367 aa30.95■■■□□ 2.55
DENND4A-208ENST00000568515 SETD5Q9C0A6 1442 aa30.92■■■□□ 2.54
DENND4A-208ENST00000568515 KCNH8Q96L42 1107 aa30.89■■■□□ 2.54
DENND4A-208ENST00000568515 LRRC9Q6ZRR7 1453 aa30.87■■■□□ 2.53
DENND4A-208ENST00000568515 TSHZ2Q9NRE2 1034 aa30.84■■■□□ 2.53
DENND4A-208ENST00000568515 PRDM2Q13029 1718 aa30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms