RNA–Protein interactions for RNA: ENST00000509468.1

KDM3B-206, Transcript of lysine demethylase 3B, humanhuman

TSL 5

Gene KDM3B, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3B-206ENST00000509468 NISCHQ9Y2I1 1504 aa31.3■■■□□ 2.6
KDM3B-206ENST00000509468 CCDC180Q9P1Z9 1646 aa28.04■■■□□ 2.08
KDM3B-206ENST00000509468 ABCC9O60706 1549 aa27.88■■■□□ 2.05
KDM3B-206ENST00000509468 RB1CC1Q8TDY2 1594 aa26.65■■□□□ 1.86
KDM3B-206ENST00000509468 NACADO15069 1562 aa26.5■■□□□ 1.83
KDM3B-206ENST00000509468 DCAF8L2P0C7V8 631 aa26.47■■□□□ 1.83
KDM3B-206ENST00000509468 MYO15BQ96JP2 1530 aa26.18■■□□□ 1.78
KDM3B-206ENST00000509468 DNAJC5BQ9UF47 199 aa26.06■■□□□ 1.76
KDM3B-206ENST00000509468 PABPN1Q86U42 306 aaKnown RBP eCLIP26.01■■□□□ 1.75
KDM3B-206ENST00000509468 UNC13AQ9UPW8 1703 aa26.01■■□□□ 1.75
KDM3B-206ENST00000509468 ZCCHC6Q5VYS8 1495 aaKnown RBP25.92■■□□□ 1.74
KDM3B-206ENST00000509468 DCAF1Q9Y4B6 1507 aa25.88■■□□□ 1.73
KDM3B-206ENST00000509468 BICRAQ9NZM4 1560 aa25.81■■□□□ 1.72
KDM3B-206ENST00000509468 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
KDM3B-206ENST00000509468 SCRIBQ14160 1630 aa25.5■■□□□ 1.67
KDM3B-206ENST00000509468 CC2D2AQ9P2K1 1620 aa25.21■■□□□ 1.63
KDM3B-206ENST00000509468 EIF4G1Q04637 1599 aaKnown RBP25.18■■□□□ 1.62
KDM3B-206ENST00000509468 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
KDM3B-206ENST00000509468 NCAPD3P42695 1498 aa24.46■■□□□ 1.51
KDM3B-206ENST00000509468 SMARCA4P51532 1647 aa24.37■■□□□ 1.49
KDM3B-206ENST00000509468 ATAD2BQ9ULI0 1458 aa24.37■■□□□ 1.49
KDM3B-206ENST00000509468 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
KDM3B-206ENST00000509468 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
KDM3B-206ENST00000509468 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
KDM3B-206ENST00000509468 BAZ1BQ9UIG0 1483 aaKnown RBP24.15■■□□□ 1.46
KDM3B-206ENST00000509468 PEG3Q9GZU2 1588 aa24.14■■□□□ 1.45
KDM3B-206ENST00000509468 ERCC6Q03468 1493 aa24.1■■□□□ 1.45
KDM3B-206ENST00000509468 MROH2BQ7Z745 1585 aa24.08■■□□□ 1.45
KDM3B-206ENST00000509468 CUX2O14529 1486 aa24.01■■□□□ 1.43
KDM3B-206ENST00000509468 NESP48681 1621 aa23.97■■□□□ 1.43
KDM3B-206ENST00000509468 DNAJC5Q9H3Z4 198 aa23.92■■□□□ 1.42
KDM3B-206ENST00000509468 LAMC3Q9Y6N6 1575 aa23.89■■□□□ 1.41
KDM3B-206ENST00000509468 WIZO95785 1651 aa23.82■■□□□ 1.4
KDM3B-206ENST00000509468 PDS5BQ9NTI5 1447 aa23.78■■□□□ 1.4
KDM3B-206ENST00000509468 CADPSQ9ULU8 1353 aa23.73■■□□□ 1.39
KDM3B-206ENST00000509468 KIF21AQ7Z4S6 1674 aa23.69■■□□□ 1.38
KDM3B-206ENST00000509468 THOC2Q8NI27 1593 aaKnown RBP23.69■■□□□ 1.38
KDM3B-206ENST00000509468 RSF1Q96T23 1441 aaPredicted RBP23.66■■□□□ 1.38
KDM3B-206ENST00000509468 TOP2AP11388 1531 aaKnown RBP23.52■■□□□ 1.36
KDM3B-206ENST00000509468 MRC2Q9UBG0 1479 aa23.5■■□□□ 1.35
KDM3B-206ENST00000509468 CFTRP13569 1480 aa23.47■■□□□ 1.35
KDM3B-206ENST00000509468 CEP164Q9UPV0 1460 aa23.45■■□□□ 1.34
KDM3B-206ENST00000509468 WDR62O43379 1518 aa23.43■■□□□ 1.34
KDM3B-206ENST00000509468 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
KDM3B-206ENST00000509468 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
KDM3B-206ENST00000509468 PRDM2Q13029 1718 aa23.25■■□□□ 1.31
KDM3B-206ENST00000509468 URB2Q14146 1524 aaKnown RBP23.19■■□□□ 1.3
KDM3B-206ENST00000509468 ABCC8Q09428 1581 aa23.05■■□□□ 1.28
KDM3B-206ENST00000509468 OSCARQ8IYS5 282 aa23.04■■□□□ 1.28
KDM3B-206ENST00000509468 IFT140Q96RY7 1462 aa22.98■■□□□ 1.27
KDM3B-206ENST00000509468 TOPBP1Q92547 1522 aa22.98■■□□□ 1.27
KDM3B-206ENST00000509468 DNMBPQ6XZF7 1577 aa22.93■■□□□ 1.26
KDM3B-206ENST00000509468 TRIM41Q8WV44 630 aa22.89■■□□□ 1.25
KDM3B-206ENST00000509468 ZNF608Q9ULD9 1512 aaPredicted RBP22.88■■□□□ 1.25
KDM3B-206ENST00000509468 TARBP1Q13395 1621 aaKnown RBP22.78■■□□□ 1.24
KDM3B-206ENST00000509468 SUPT5HO00267 1087 aaKnown RBP22.76■■□□□ 1.23
KDM3B-206ENST00000509468 EIF4G3O43432 1585 aaKnown RBP22.76■■□□□ 1.23
KDM3B-206ENST00000509468 POLA1P09884 1462 aaPredicted RBP22.75■■□□□ 1.23
KDM3B-206ENST00000509468 AQRO60306 1485 aaKnown RBP eCLIP22.73■■□□□ 1.231e-22■■■■■ 63.4
KDM3B-206ENST00000509468 SOGA1O94964 1423 aa22.72■■□□□ 1.23
KDM3B-206ENST00000509468 RAD54L2Q9Y4B4 1467 aa22.66■■□□□ 1.22
KDM3B-206ENST00000509468 FGD5Q6ZNL6 1462 aa22.63■■□□□ 1.21
KDM3B-206ENST00000509468 FBLN2P98095 1184 aa22.63■■□□□ 1.21
KDM3B-206ENST00000509468 CUX1P39880 1505 aa22.62■■□□□ 1.21
KDM3B-206ENST00000509468 TDRD9Q8NDG6 1382 aaKnown RBP22.62■■□□□ 1.21
KDM3B-206ENST00000509468 WDR97A6NE52 1622 aa22.6■■□□□ 1.21
KDM3B-206ENST00000509468 RIMBP3CA6NJZ7 1639 aa22.6■■□□□ 1.21
KDM3B-206ENST00000509468 RIMBP3BA6NNM3 1639 aa22.6■■□□□ 1.21
KDM3B-206ENST00000509468 RIMBP3Q9UFD9 1639 aa22.6■■□□□ 1.21
KDM3B-206ENST00000509468 CHD1O14646 1710 aa22.6■■□□□ 1.21
KDM3B-206ENST00000509468 ARHGEF11O15085 1522 aa22.53■■□□□ 1.2
KDM3B-206ENST00000509468 CHMP7Q8WUX9 453 aaPredicted RBP22.5■■□□□ 1.19
KDM3B-206ENST00000509468 GRIN2BQ13224 1484 aa22.48■■□□□ 1.19
KDM3B-206ENST00000509468 SNAPC4Q5SXM2 1469 aa22.47■■□□□ 1.19
KDM3B-206ENST00000509468 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
KDM3B-206ENST00000509468 CYB5RLQ6IPT4 315 aa22.46■■□□□ 1.19
KDM3B-206ENST00000509468 GAPVD1Q14C86 1478 aa22.42■■□□□ 1.18
KDM3B-206ENST00000509468 ABCA10Q8WWZ4 1543 aa22.4■■□□□ 1.18
KDM3B-206ENST00000509468 SYNJ2O15056 1496 aa22.39■■□□□ 1.17
KDM3B-206ENST00000509468 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
KDM3B-206ENST00000509468 PBRM1Q86U86 1689 aa22.37■■□□□ 1.17
KDM3B-206ENST00000509468 SYNJ1O43426 1573 aa22.37■■□□□ 1.17
KDM3B-206ENST00000509468 TOP2BQ02880 1626 aa22.32■■□□□ 1.16
KDM3B-206ENST00000509468 ABCA5Q8WWZ7 1642 aa22.32■■□□□ 1.16
KDM3B-206ENST00000509468 BIVM-ERCC5R4GMW8 1640 aa22.32■■□□□ 1.16
KDM3B-206ENST00000509468 CLASP1Q7Z460 1538 aa22.31■■□□□ 1.16
KDM3B-206ENST00000509468 ARAP1Q96P48 1450 aa22.29■■□□□ 1.16
KDM3B-206ENST00000509468 TRHP20396 242 aaPredicted RBP22.18■■□□□ 1.14
KDM3B-206ENST00000509468 GRIN2AQ12879 1464 aa22.16■■□□□ 1.14
KDM3B-206ENST00000509468 FHAD1B1AJZ9 1412 aa22.14■■□□□ 1.14
KDM3B-206ENST00000509468 ERICH3Q5RHP9 1530 aa22.14■■□□□ 1.13
KDM3B-206ENST00000509468 ADAMTS12P58397 1594 aa22.13■■□□□ 1.13
KDM3B-206ENST00000509468 NUP160Q12769 1436 aa22.08■■□□□ 1.13
KDM3B-206ENST00000509468 CEP170Q5SW79 1584 aa22.05■■□□□ 1.12
KDM3B-206ENST00000509468 SHROOM2Q13796 1616 aa21.97■■□□□ 1.11
KDM3B-206ENST00000509468 JPH4Q96JJ6 628 aa21.96■■□□□ 1.11
KDM3B-206ENST00000509468 ERCC6L2Q5T890 1561 aa21.95■■□□□ 1.11
KDM3B-206ENST00000509468 KIF27Q86VH2 1401 aa21.94■■□□□ 1.1
KDM3B-206ENST00000509468 IGF1RP08069 1367 aa21.9■■□□□ 1.1
KDM3B-206ENST00000509468 PRG4Q92954 1404 aaPredicted RBP21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms