RNA–Protein interactions for RNA: ENST00000542128.5

KDM3A-216, Transcript of lysine demethylase 3A, humanhuman

TSL 5 BASIC

Gene KDM3A, Length 4,311 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-216ENST00000542128 DCAF8L2P0C7V8 631 aa22.14■■□□□ 1.14
KDM3A-216ENST00000542128 NISCHQ9Y2I1 1504 aa21.8■■□□□ 1.08
KDM3A-216ENST00000542128 PELP1Q8IZL8 1130 aaKnown RBP20.91■□□□□ 0.94
KDM3A-216ENST00000542128 MYT1Q01538 1121 aa20.59■□□□□ 0.89
KDM3A-216ENST00000542128 SUPT5HO00267 1087 aaKnown RBP20.22■□□□□ 0.83
KDM3A-216ENST00000542128 SHROOM4Q9ULL8 1493 aa20.18■□□□□ 0.82
KDM3A-216ENST00000542128 PCGF6Q9BYE7 350 aa19.88■□□□□ 0.77
KDM3A-216ENST00000542128 HRCP23327 699 aa19.82■□□□□ 0.76
KDM3A-216ENST00000542128 CENPBP07199 599 aaPredicted RBP19.52■□□□□ 0.72
KDM3A-216ENST00000542128 EHMT2Q96KQ7 1210 aa19.52■□□□□ 0.71
KDM3A-216ENST00000542128 PPARGC1BQ86YN6 1023 aaKnown RBP19.43■□□□□ 0.7
KDM3A-216ENST00000542128 ZEB1P37275 1124 aaPredicted RBP19.33■□□□□ 0.69
KDM3A-216ENST00000542128 ABCC9O60706 1549 aa19.13■□□□□ 0.65
KDM3A-216ENST00000542128 FAM9AQ8IZU1 332 aaPredicted RBP19.13■□□□□ 0.65
KDM3A-216ENST00000542128 TTBK1Q5TCY1 1321 aaPredicted RBP19.06■□□□□ 0.64
KDM3A-216ENST00000542128 APLP2Q06481 763 aa18.96■□□□□ 0.63
KDM3A-216ENST00000542128 PABPN1Q86U42 306 aaKnown RBP eCLIP18.93■□□□□ 0.62
KDM3A-216ENST00000542128 RANGAP1P46060 587 aaPredicted RBP18.93■□□□□ 0.62
KDM3A-216ENST00000542128 YTHDC1Q96MU7 727 aaKnown RBP18.91■□□□□ 0.62
KDM3A-216ENST00000542128 ERICH6Q7L0X2 663 aa18.91■□□□□ 0.62
KDM3A-216ENST00000542128 GTF3C3Q9Y5Q9 886 aa18.87■□□□□ 0.61
KDM3A-216ENST00000542128 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.6
KDM3A-216ENST00000542128 TRIM26Q12899 539 aaPredicted RBP18.81■□□□□ 0.6
KDM3A-216ENST00000542128 ATP1B4Q9UN42 357 aaPredicted RBP18.77■□□□□ 0.6
KDM3A-216ENST00000542128 CCER1Q8TC90 406 aaPredicted RBP18.75■□□□□ 0.59
KDM3A-216ENST00000542128 TRIM41Q8WV44 630 aa18.75■□□□□ 0.59
KDM3A-216ENST00000542128 ACIN1Q9UKV3 1341 aaKnown RBP18.71■□□□□ 0.59
KDM3A-216ENST00000542128 UBTFP17480 764 aaKnown RBP18.58■□□□□ 0.56
KDM3A-216ENST00000542128 DIEXFQ68CQ4 756 aaKnown RBP18.48■□□□□ 0.55
KDM3A-216ENST00000542128 NEUROD1Q13562 356 aa18.41■□□□□ 0.54
KDM3A-216ENST00000542128 NEFLP07196 543 aa18.37■□□□□ 0.53
KDM3A-216ENST00000542128 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.35■□□□□ 0.53
KDM3A-216ENST00000542128 HNRNPUL2Q1KMD3 747 aaKnown RBP18.35■□□□□ 0.53
KDM3A-216ENST00000542128 BCL11AQ9H165 835 aa18.34■□□□□ 0.53
KDM3A-216ENST00000542128 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
KDM3A-216ENST00000542128 LOC105371045A0A1W2PR82 267 aa18.31■□□□□ 0.52
KDM3A-216ENST00000542128 MYT1LQ9UL68 1186 aa18.27■□□□□ 0.52
KDM3A-216ENST00000542128 CCDC180Q9P1Z9 1646 aa18.24■□□□□ 0.51
KDM3A-216ENST00000542128 FBLN2P98095 1184 aa18.16■□□□□ 0.5
KDM3A-216ENST00000542128 ANP32EQ9BTT0 268 aa18.09■□□□□ 0.49
KDM3A-216ENST00000542128 ZCCHC6Q5VYS8 1495 aaKnown RBP18.02■□□□□ 0.47
KDM3A-216ENST00000542128 BCANQ96GW7 911 aa17.98■□□□□ 0.47
KDM3A-216ENST00000542128 SCRIBQ14160 1630 aa17.97■□□□□ 0.47
KDM3A-216ENST00000542128 RTL5Q5HYW3 569 aaPredicted RBP17.96■□□□□ 0.47
KDM3A-216ENST00000542128 ITGAEP38570 1179 aa17.86■□□□□ 0.45
KDM3A-216ENST00000542128 ZNF316A6NFI3 1004 aaPredicted RBP17.85■□□□□ 0.45
KDM3A-216ENST00000542128 RB1CC1Q8TDY2 1594 aa17.83■□□□□ 0.45
KDM3A-216ENST00000542128 EIF5BO60841 1220 aaKnown RBP17.79■□□□□ 0.44
KDM3A-216ENST00000542128 CLSPNQ9HAW4 1339 aa17.79■□□□□ 0.44
KDM3A-216ENST00000542128 DCAF1Q9Y4B6 1507 aa17.75■□□□□ 0.43
KDM3A-216ENST00000542128 CSRNP3Q8WYN3 585 aa17.68■□□□□ 0.42
KDM3A-216ENST00000542128 PRKCSHP14314 528 aaPredicted RBP17.68■□□□□ 0.42
KDM3A-216ENST00000542128 NACADO15069 1562 aa17.68■□□□□ 0.42
KDM3A-216ENST00000542128 CDK11AQ9UQ88 783 aaPredicted RBP17.67■□□□□ 0.42
KDM3A-216ENST00000542128 ARID3CA6NKF2 412 aa17.6■□□□□ 0.41
KDM3A-216ENST00000542128 FKBP8Q14318 412 aa17.56■□□□□ 0.4
KDM3A-216ENST00000542128 P3H3Q8IVL6 736 aa17.55■□□□□ 0.4
KDM3A-216ENST00000542128 DAXXQ9UER7 740 aaPredicted RBP17.55■□□□□ 0.4
KDM3A-216ENST00000542128 MIER1Q8N108 512 aa17.53■□□□□ 0.4
KDM3A-216ENST00000542128 NPM1P06748 294 aaKnown RBP eCLIP17.51■□□□□ 0.39
KDM3A-216ENST00000542128 GLIPR1L2Q4G1C9 344 aa17.51■□□□□ 0.39
KDM3A-216ENST00000542128 FAM50AQ14320 339 aaKnown RBP17.47■□□□□ 0.39
KDM3A-216ENST00000542128 NBR1Q14596 966 aa17.46■□□□□ 0.39
KDM3A-216ENST00000542128 MYO15BQ96JP2 1530 aa17.45■□□□□ 0.38
KDM3A-216ENST00000542128 POLR3GLQ9BT43 218 aa17.44■□□□□ 0.38
KDM3A-216ENST00000542128 SUPT16HQ9Y5B9 1047 aaKnown RBP17.42■□□□□ 0.38
KDM3A-216ENST00000542128 CHMP7Q8WUX9 453 aaPredicted RBP17.4■□□□□ 0.38
KDM3A-216ENST00000542128 TSHZ2Q9NRE2 1034 aa17.36■□□□□ 0.37
KDM3A-216ENST00000542128 TRIM52Q96A61 297 aa17.34■□□□□ 0.37
KDM3A-216ENST00000542128 SLC4A1APQ9BWU0 796 aaKnown RBP17.33■□□□□ 0.36
KDM3A-216ENST00000542128 ANP32AP39687 249 aaKnown RBP17.33■□□□□ 0.36
KDM3A-216ENST00000542128 PLPPR3Q6T4P5 718 aa17.32■□□□□ 0.36
KDM3A-216ENST00000542128 RTN4Q9NQC3 1192 aaKnown RBP17.32■□□□□ 0.36
KDM3A-216ENST00000542128 ZNF777Q9ULD5 760 aaPredicted RBP17.32■□□□□ 0.36
KDM3A-216ENST00000542128 DEKP35659 375 aaKnown RBP17.31■□□□□ 0.36
KDM3A-216ENST00000542128 ESF1Q9H501 851 aaKnown RBP17.3■□□□□ 0.36
KDM3A-216ENST00000542128 CNGB1Q14028 1251 aaPredicted RBP17.26■□□□□ 0.35
KDM3A-216ENST00000542128 ERCC6Q03468 1493 aa17.25■□□□□ 0.35
KDM3A-216ENST00000542128 RBM19Q9Y4C8 960 aaKnown RBP17.23■□□□□ 0.35
KDM3A-216ENST00000542128 CECR2Q9BXF3 1484 aa17.21■□□□□ 0.35
KDM3A-216ENST00000542128 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
KDM3A-216ENST00000542128 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
KDM3A-216ENST00000542128 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.16■□□□□ 0.34
KDM3A-216ENST00000542128 ZBTB47Q9UFB7 747 aaPredicted RBP17.16■□□□□ 0.34
KDM3A-216ENST00000542128 ANP32CO43423 234 aa17.15■□□□□ 0.34
KDM3A-216ENST00000542128 CCDC136Q96JN2 1154 aa17.15■□□□□ 0.34
KDM3A-216ENST00000542128 NPM2Q86SE8 214 aaKnown RBP17.12■□□□□ 0.33
KDM3A-216ENST00000542128 ZNF326Q5BKZ1 582 aaKnown RBP17.1■□□□□ 0.33
KDM3A-216ENST00000542128 ANO8Q9HCE9 1232 aaPredicted RBP17.07■□□□□ 0.32
KDM3A-216ENST00000542128 BAZ1AQ9NRL2 1556 aaPredicted RBP17.06■□□□□ 0.32
KDM3A-216ENST00000542128 KCNH8Q96L42 1107 aa17.05■□□□□ 0.32
KDM3A-216ENST00000542128 ERICH6BQ5W0A0 696 aa17.04■□□□□ 0.32
KDM3A-216ENST00000542128 TRHP20396 242 aaPredicted RBP17.04■□□□□ 0.32
KDM3A-216ENST00000542128 STAG3Q9UJ98 1225 aa17.03■□□□□ 0.32
KDM3A-216ENST00000542128 CHGAP10645 457 aaKnown RBP17■□□□□ 0.31
KDM3A-216ENST00000542128 IRX6P78412 446 aaPredicted RBP16.99■□□□□ 0.31
KDM3A-216ENST00000542128 NOP58Q9Y2X3 529 aaKnown RBP16.97■□□□□ 0.31
KDM3A-216ENST00000542128 NEFMP07197 916 aa16.95■□□□□ 0.3
KDM3A-216ENST00000542128 HNRNPUQ00839 825 aaKnown RBP eCLIP16.92■□□□□ 0.3
KDM3A-216ENST00000542128 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms