RNA–Protein interactions for RNA: ENST00000434316.6

TMCO3-202, Transcript of transmembrane and coiled-coil domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMCO3, Length 3,050 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMCO3-202ENST00000434316 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
TMCO3-202ENST00000434316 SHROOM4Q9ULL8 1493 aa26.02■■□□□ 1.76
TMCO3-202ENST00000434316 SUPT5HO00267 1087 aaKnown RBP25.67■■□□□ 1.7
TMCO3-202ENST00000434316 ZCCHC6Q5VYS8 1495 aaKnown RBP25.37■■□□□ 1.65
TMCO3-202ENST00000434316 CCDC180Q9P1Z9 1646 aa25.14■■□□□ 1.61
TMCO3-202ENST00000434316 MYO15BQ96JP2 1530 aa25.13■■□□□ 1.61
TMCO3-202ENST00000434316 CHIC1Q5VXU3 224 aa25.06■■□□□ 1.6
TMCO3-202ENST00000434316 HRCP23327 699 aa24.94■■□□□ 1.58
TMCO3-202ENST00000434316 DCAF8L2P0C7V8 631 aa24.92■■□□□ 1.58
TMCO3-202ENST00000434316 PCGF6Q9BYE7 350 aa24.75■■□□□ 1.55
TMCO3-202ENST00000434316 PPARGC1BQ86YN6 1023 aaKnown RBP24.51■■□□□ 1.51
TMCO3-202ENST00000434316 LOC105371045A0A1W2PR82 267 aa24.44■■□□□ 1.5
TMCO3-202ENST00000434316 DCAF1Q9Y4B6 1507 aa24.42■■□□□ 1.5
TMCO3-202ENST00000434316 TRIM26Q12899 539 aaPredicted RBP24.07■■□□□ 1.44
TMCO3-202ENST00000434316 ABCC9O60706 1549 aa24.01■■□□□ 1.43
TMCO3-202ENST00000434316 RSF1Q96T23 1441 aaPredicted RBP23.87■■□□□ 1.41
TMCO3-202ENST00000434316 SCRIBQ14160 1630 aa23.83■■□□□ 1.4
TMCO3-202ENST00000434316 TRIM41Q8WV44 630 aa23.79■■□□□ 1.4
TMCO3-202ENST00000434316 FAM9AQ8IZU1 332 aaPredicted RBP23.75■■□□□ 1.39
TMCO3-202ENST00000434316 RB1CC1Q8TDY2 1594 aa23.72■■□□□ 1.39
TMCO3-202ENST00000434316 ZEB1P37275 1124 aaPredicted RBP23.64■■□□□ 1.37
TMCO3-202ENST00000434316 EHMT2Q96KQ7 1210 aa23.63■■□□□ 1.37
TMCO3-202ENST00000434316 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
TMCO3-202ENST00000434316 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
TMCO3-202ENST00000434316 SCAF1Q9H7N4 1312 aaKnown RBP23.28■■□□□ 1.32
TMCO3-202ENST00000434316 WIZO95785 1651 aa23.25■■□□□ 1.31
TMCO3-202ENST00000434316 NACADO15069 1562 aa23.18■■□□□ 1.3
TMCO3-202ENST00000434316 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.15■■□□□ 1.3
TMCO3-202ENST00000434316 PELP1Q8IZL8 1130 aaKnown RBP23.06■■□□□ 1.28
TMCO3-202ENST00000434316 CCER1Q8TC90 406 aaPredicted RBP23.06■■□□□ 1.28
TMCO3-202ENST00000434316 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
TMCO3-202ENST00000434316 EIF4G1Q04637 1599 aaKnown RBP23.04■■□□□ 1.28
TMCO3-202ENST00000434316 TTBK1Q5TCY1 1321 aaPredicted RBP22.95■■□□□ 1.27
TMCO3-202ENST00000434316 ABCC8Q09428 1581 aa22.92■■□□□ 1.26
TMCO3-202ENST00000434316 CCDC88BA6NC98 1476 aa22.88■■□□□ 1.25
TMCO3-202ENST00000434316 ACIN1Q9UKV3 1341 aaKnown RBP22.87■■□□□ 1.25
TMCO3-202ENST00000434316 NEUROD1Q13562 356 aa22.87■■□□□ 1.25
TMCO3-202ENST00000434316 DIEXFQ68CQ4 756 aaKnown RBP22.81■■□□□ 1.24
TMCO3-202ENST00000434316 WRNQ14191 1432 aaPredicted RBP eCLIP22.8■■□□□ 1.24
TMCO3-202ENST00000434316 CEP162Q5TB80 1403 aa22.8■■□□□ 1.24
TMCO3-202ENST00000434316 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
TMCO3-202ENST00000434316 SOGA1O94964 1423 aa22.77■■□□□ 1.24
TMCO3-202ENST00000434316 SMARCA2P51531 1590 aa22.73■■□□□ 1.23
TMCO3-202ENST00000434316 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
TMCO3-202ENST00000434316 TNIKQ9UKE5 1360 aa22.69■■□□□ 1.22
TMCO3-202ENST00000434316 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
TMCO3-202ENST00000434316 GTF3C3Q9Y5Q9 886 aa22.66■■□□□ 1.22
TMCO3-202ENST00000434316 UBTFP17480 764 aaKnown RBP22.63■■□□□ 1.21
TMCO3-202ENST00000434316 CSRNP3Q8WYN3 585 aa22.63■■□□□ 1.21
TMCO3-202ENST00000434316 CENPBP07199 599 aaPredicted RBP22.62■■□□□ 1.21
TMCO3-202ENST00000434316 EEA1Q15075 1411 aa22.55■■□□□ 1.2
TMCO3-202ENST00000434316 ZNF316A6NFI3 1004 aaPredicted RBP22.51■■□□□ 1.19
TMCO3-202ENST00000434316 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
TMCO3-202ENST00000434316 GOLGA3Q08378 1498 aa22.49■■□□□ 1.19
TMCO3-202ENST00000434316 HNRNPUL2Q1KMD3 747 aaKnown RBP22.42■■□□□ 1.18
TMCO3-202ENST00000434316 YTHDC1Q96MU7 727 aaKnown RBP22.39■■□□□ 1.18
TMCO3-202ENST00000434316 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
TMCO3-202ENST00000434316 MIER1Q8N108 512 aa22.32■■□□□ 1.16
TMCO3-202ENST00000434316 CEP164Q9UPV0 1460 aa22.31■■□□□ 1.16
TMCO3-202ENST00000434316 SYNJ1O43426 1573 aa22.3■■□□□ 1.16
TMCO3-202ENST00000434316 CLIP1P30622 1438 aa22.29■■□□□ 1.16
TMCO3-202ENST00000434316 KIF21BO75037 1637 aa22.26■■□□□ 1.15
TMCO3-202ENST00000434316 RANGAP1P46060 587 aaPredicted RBP22.22■■□□□ 1.15
TMCO3-202ENST00000434316 VPS8Q8N3P4 1428 aa22.21■■□□□ 1.15
TMCO3-202ENST00000434316 BICRAQ9NZM4 1560 aa22.2■■□□□ 1.14
TMCO3-202ENST00000434316 RAPGEF2Q9Y4G8 1499 aa22.18■■□□□ 1.14
TMCO3-202ENST00000434316 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
TMCO3-202ENST00000434316 APLP2Q06481 763 aa22.15■■□□□ 1.14
TMCO3-202ENST00000434316 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
TMCO3-202ENST00000434316 ATAD2BQ9ULI0 1458 aa22.05■■□□□ 1.12
TMCO3-202ENST00000434316 DHX57Q6P158 1386 aaKnown RBP21.95■■□□□ 1.1
TMCO3-202ENST00000434316 MYT1Q01538 1121 aa21.93■■□□□ 1.1
TMCO3-202ENST00000434316 TOP2BQ02880 1626 aa21.92■■□□□ 1.1
TMCO3-202ENST00000434316 KANK4Q5T7N3 995 aaPredicted RBP21.91■■□□□ 1.1
TMCO3-202ENST00000434316 ARAP1Q96P48 1450 aa21.9■■□□□ 1.1
TMCO3-202ENST00000434316 CLSPNQ9HAW4 1339 aa21.86■■□□□ 1.09
TMCO3-202ENST00000434316 PRXQ9BXM0 1461 aa21.84■■□□□ 1.09
TMCO3-202ENST00000434316 BIVM-ERCC5R4GMW8 1640 aa21.82■■□□□ 1.08
TMCO3-202ENST00000434316 ERICH3Q5RHP9 1530 aa21.82■■□□□ 1.08
TMCO3-202ENST00000434316 RRBP1Q9P2E9 1410 aaKnown RBP21.74■■□□□ 1.07
TMCO3-202ENST00000434316 SUPT16HQ9Y5B9 1047 aaKnown RBP21.72■■□□□ 1.07
TMCO3-202ENST00000434316 ITGAEP38570 1179 aa21.7■■□□□ 1.06
TMCO3-202ENST00000434316 CUX1P39880 1505 aa21.69■■□□□ 1.06
TMCO3-202ENST00000434316 CCNB3Q8WWL7 1395 aa21.67■■□□□ 1.06
TMCO3-202ENST00000434316 KIF27Q86VH2 1401 aa21.65■■□□□ 1.06
TMCO3-202ENST00000434316 CUX2O14529 1486 aa21.64■■□□□ 1.06
TMCO3-202ENST00000434316 ARHGAP35Q9NRY4 1499 aa21.64■■□□□ 1.05
TMCO3-202ENST00000434316 KCNH8Q96L42 1107 aa21.59■■□□□ 1.05
TMCO3-202ENST00000434316 RAB3GAP2Q9H2M9 1393 aa21.55■■□□□ 1.04
TMCO3-202ENST00000434316 MAPKBP1O60336 1514 aa21.52■■□□□ 1.04
TMCO3-202ENST00000434316 NCAPD3P42695 1498 aa21.49■■□□□ 1.03
TMCO3-202ENST00000434316 HMGXB3Q12766 1538 aa21.49■■□□□ 1.03
TMCO3-202ENST00000434316 TSHZ2Q9NRE2 1034 aa21.47■■□□□ 1.03
TMCO3-202ENST00000434316 CFTRP13569 1480 aa21.46■■□□□ 1.03
TMCO3-202ENST00000434316 TIAM1Q13009 1591 aa21.44■■□□□ 1.02
TMCO3-202ENST00000434316 SIN3AQ96ST3 1273 aa21.42■■□□□ 1.02
TMCO3-202ENST00000434316 IGF1RP08069 1367 aa21.42■■□□□ 1.02
TMCO3-202ENST00000434316 SETD5Q9C0A6 1442 aa21.41■■□□□ 1.02
TMCO3-202ENST00000434316 DDX10Q13206 875 aaKnown RBP21.4■■□□□ 1.02
TMCO3-202ENST00000434316 PHLDB1Q86UU1 1377 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms