RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 NISCHQ9Y2I1 1504 aa19.48■□□□□ 0.71
CHD6-201ENST00000309279 CCDC180Q9P1Z9 1646 aa17.24■□□□□ 0.35
CHD6-201ENST00000309279 ABCC9O60706 1549 aa16.65■□□□□ 0.26
CHD6-201ENST00000309279 ZCCHC6Q5VYS8 1495 aaKnown RBP16.26■□□□□ 0.19
CHD6-201ENST00000309279 NACADO15069 1562 aa16.17■□□□□ 0.18
CHD6-201ENST00000309279 MYO15BQ96JP2 1530 aa16.16■□□□□ 0.18
CHD6-201ENST00000309279 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
CHD6-201ENST00000309279 DCAF8L2P0C7V8 631 aa16.14■□□□□ 0.17
CHD6-201ENST00000309279 RB1CC1Q8TDY2 1594 aa16.12■□□□□ 0.17
CHD6-201ENST00000309279 SLC24A1O60721 1099 aa15.85■□□□□ 0.13
CHD6-201ENST00000309279 UNC13AQ9UPW8 1703 aa15.79■□□□□ 0.12
CHD6-201ENST00000309279 SCRIBQ14160 1630 aa15.7■□□□□ 0.1
CHD6-201ENST00000309279 BICRAQ9NZM4 1560 aa15.65■□□□□ 0.1
CHD6-201ENST00000309279 PABPN1Q86U42 306 aaKnown RBP eCLIP15.59■□□□□ 0.09
CHD6-201ENST00000309279 SHROOM4Q9ULL8 1493 aa15.51■□□□□ 0.07
CHD6-201ENST00000309279 EIF4G1Q04637 1599 aaKnown RBP15.21■□□□□ 0.02
CHD6-201ENST00000309279 DNAJC5BQ9UF47 199 aa15.17■□□□□ 0.02
CHD6-201ENST00000309279 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
CHD6-201ENST00000309279 CC2D2AQ9P2K1 1620 aa15.1■□□□□ 0.01
CHD6-201ENST00000309279 BAZ1AQ9NRL2 1556 aaPredicted RBP15.08■□□□□ 0
CHD6-201ENST00000309279 SMARCA4P51532 1647 aa15.06■□□□□ 0
CHD6-201ENST00000309279 MROH2BQ7Z745 1585 aa15□□□□□ -0.01
CHD6-201ENST00000309279 PEG3Q9GZU2 1588 aa14.95□□□□□ -0.02
CHD6-201ENST00000309279 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
CHD6-201ENST00000309279 SMARCA2P51531 1590 aa14.93□□□□□ -0.02
CHD6-201ENST00000309279 NCAPD3P42695 1498 aa14.93□□□□□ -0.02
CHD6-201ENST00000309279 RSF1Q96T23 1441 aaPredicted RBP14.9□□□□□ -0.02
CHD6-201ENST00000309279 HMGXB3Q12766 1538 aa14.86□□□□□ -0.03
CHD6-201ENST00000309279 WIZO95785 1651 aa14.84□□□□□ -0.03
CHD6-201ENST00000309279 BAZ1BQ9UIG0 1483 aaKnown RBP14.81□□□□□ -0.04
CHD6-201ENST00000309279 CHIC1Q5VXU3 224 aa14.71□□□□□ -0.05
CHD6-201ENST00000309279 TOP2AP11388 1531 aaKnown RBP14.69□□□□□ -0.06
CHD6-201ENST00000309279 SUPT5HO00267 1087 aaKnown RBP14.61□□□□□ -0.07
CHD6-201ENST00000309279 CCDC88BA6NC98 1476 aa14.53□□□□□ -0.08
CHD6-201ENST00000309279 CADPSQ9ULU8 1353 aa14.49□□□□□ -0.09
CHD6-201ENST00000309279 LAMC3Q9Y6N6 1575 aa14.49□□□□□ -0.09
CHD6-201ENST00000309279 NESP48681 1621 aa14.47□□□□□ -0.09
CHD6-201ENST00000309279 EHMT2Q96KQ7 1210 aa14.47□□□□□ -0.09
CHD6-201ENST00000309279 DAXXQ9UER7 740 aaPredicted RBP14.46□□□□□ -0.09
CHD6-201ENST00000309279 CFTRP13569 1480 aa14.45□□□□□ -0.1
CHD6-201ENST00000309279 PDS5BQ9NTI5 1447 aa14.38□□□□□ -0.11
CHD6-201ENST00000309279 PRDM2Q13029 1718 aa14.35□□□□□ -0.11
CHD6-201ENST00000309279 ERCC6Q03468 1493 aa14.33□□□□□ -0.12
CHD6-201ENST00000309279 KIF21AQ7Z4S6 1674 aa14.32□□□□□ -0.12
CHD6-201ENST00000309279 FANCD2Q9BXW9 1451 aa14.3□□□□□ -0.12
CHD6-201ENST00000309279 CEP164Q9UPV0 1460 aa14.26□□□□□ -0.13
CHD6-201ENST00000309279 THOC2Q8NI27 1593 aaKnown RBP14.23□□□□□ -0.13
CHD6-201ENST00000309279 MRC2Q9UBG0 1479 aa14.21□□□□□ -0.13
CHD6-201ENST00000309279 WDR62O43379 1518 aa14.18□□□□□ -0.14
CHD6-201ENST00000309279 NCBP3Q53F19 620 aaKnown RBP14.16□□□□□ -0.14
CHD6-201ENST00000309279 PLPPR3Q6T4P5 718 aa14.16□□□□□ -0.14
CHD6-201ENST00000309279 URB2Q14146 1524 aaKnown RBP14.16□□□□□ -0.14
CHD6-201ENST00000309279 CUX2O14529 1486 aa14.15□□□□□ -0.14
CHD6-201ENST00000309279 RTN4Q9NQC3 1192 aaKnown RBP14.13□□□□□ -0.15
CHD6-201ENST00000309279 ABCC8Q09428 1581 aa14.13□□□□□ -0.15
CHD6-201ENST00000309279 TOPBP1Q92547 1522 aa14.1□□□□□ -0.15
CHD6-201ENST00000309279 DNMBPQ6XZF7 1577 aa14.09□□□□□ -0.15
CHD6-201ENST00000309279 CUX1P39880 1505 aa14.06□□□□□ -0.16
CHD6-201ENST00000309279 TTBK1Q5TCY1 1321 aaPredicted RBP14.05□□□□□ -0.16
CHD6-201ENST00000309279 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.16
CHD6-201ENST00000309279 TOP2BQ02880 1626 aa13.99□□□□□ -0.17
CHD6-201ENST00000309279 BIVM-ERCC5R4GMW8 1640 aa13.99□□□□□ -0.17
CHD6-201ENST00000309279 POLA1P09884 1462 aaPredicted RBP13.99□□□□□ -0.17
CHD6-201ENST00000309279 SYNJ1O43426 1573 aa13.99□□□□□ -0.17
CHD6-201ENST00000309279 MYT1Q01538 1121 aa13.98□□□□□ -0.17
CHD6-201ENST00000309279 FGD5Q6ZNL6 1462 aa13.97□□□□□ -0.17
CHD6-201ENST00000309279 IFT140Q96RY7 1462 aa13.97□□□□□ -0.17
CHD6-201ENST00000309279 TARBP1Q13395 1621 aaKnown RBP13.94□□□□□ -0.18
CHD6-201ENST00000309279 SOGA1O94964 1423 aa13.94□□□□□ -0.18
CHD6-201ENST00000309279 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
CHD6-201ENST00000309279 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.19
CHD6-201ENST00000309279 ZNF608Q9ULD9 1512 aaPredicted RBP13.88□□□□□ -0.19
CHD6-201ENST00000309279 ABCA10Q8WWZ4 1543 aa13.87□□□□□ -0.19
CHD6-201ENST00000309279 WDR97A6NE52 1622 aa13.87□□□□□ -0.19
CHD6-201ENST00000309279 APLP2Q06481 763 aa13.84□□□□□ -0.19
CHD6-201ENST00000309279 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.2
CHD6-201ENST00000309279 AQRO60306 1485 aaKnown RBP eCLIP13.83□□□□□ -0.21e-7■■■■■ 38.2
CHD6-201ENST00000309279 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.2
CHD6-201ENST00000309279 TRIM41Q8WV44 630 aa13.82□□□□□ -0.2
CHD6-201ENST00000309279 PELP1Q8IZL8 1130 aaKnown RBP13.81□□□□□ -0.2
CHD6-201ENST00000309279 ABCA5Q8WWZ7 1642 aa13.8□□□□□ -0.2
CHD6-201ENST00000309279 GAPVD1Q14C86 1478 aa13.78□□□□□ -0.2
CHD6-201ENST00000309279 GRIN2BQ13224 1484 aa13.75□□□□□ -0.21
CHD6-201ENST00000309279 KIF27Q86VH2 1401 aa13.73□□□□□ -0.21
CHD6-201ENST00000309279 PBRM1Q86U86 1689 aa13.73□□□□□ -0.21
CHD6-201ENST00000309279 ERICH3Q5RHP9 1530 aa13.71□□□□□ -0.21
CHD6-201ENST00000309279 MAGI1Q96QZ7 1491 aaPredicted RBP13.71□□□□□ -0.22
CHD6-201ENST00000309279 SNAPC4Q5SXM2 1469 aa13.69□□□□□ -0.22
CHD6-201ENST00000309279 IGF1RP08069 1367 aa13.68□□□□□ -0.22
CHD6-201ENST00000309279 PRKCSHP14314 528 aaPredicted RBP13.66□□□□□ -0.22
CHD6-201ENST00000309279 RUSC2Q8N2Y8 1516 aa13.65□□□□□ -0.22
CHD6-201ENST00000309279 SYNJ2O15056 1496 aa13.65□□□□□ -0.22
CHD6-201ENST00000309279 ERICH6Q7L0X2 663 aa13.64□□□□□ -0.23
CHD6-201ENST00000309279 ARXQ96QS3 562 aa13.64□□□□□ -0.23
CHD6-201ENST00000309279 FHAD1B1AJZ9 1412 aa13.63□□□□□ -0.23
CHD6-201ENST00000309279 ADAMTS12P58397 1594 aa13.63□□□□□ -0.23
CHD6-201ENST00000309279 CHD1O14646 1710 aa13.62□□□□□ -0.23
CHD6-201ENST00000309279 KCNA4P22459 653 aa13.61□□□□□ -0.23
CHD6-201ENST00000309279 CHMP7Q8WUX9 453 aaPredicted RBP13.61□□□□□ -0.23
CHD6-201ENST00000309279 CUL7Q14999 1698 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms