RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 NISCHQ9Y2I1 1504 aa46.9■■■■■ 5.1
VARS-220ENST00000461874 CCDC180Q9P1Z9 1646 aa41.85■■■■■ 4.29
VARS-220ENST00000461874 ABCC9O60706 1549 aa41.58■■■■■ 4.25
VARS-220ENST00000461874 RB1CC1Q8TDY2 1594 aa39.71■■■■□ 3.95
VARS-220ENST00000461874 NACADO15069 1562 aa39.55■■■■□ 3.92
VARS-220ENST00000461874 DCAF8L2P0C7V8 631 aa39.48■■■■□ 3.91
VARS-220ENST00000461874 MYO15BQ96JP2 1530 aa39.14■■■■□ 3.86
VARS-220ENST00000461874 ZCCHC6Q5VYS8 1495 aaKnown RBP38.94■■■■□ 3.82
VARS-220ENST00000461874 PABPN1Q86U42 306 aaKnown RBP eCLIP38.82■■■■□ 3.8
VARS-220ENST00000461874 DCAF1Q9Y4B6 1507 aa38.78■■■■□ 3.8
VARS-220ENST00000461874 DNAJC5BQ9UF47 199 aa38.76■■■■□ 3.8
VARS-220ENST00000461874 UNC13AQ9UPW8 1703 aa38.72■■■■□ 3.79
VARS-220ENST00000461874 BICRAQ9NZM4 1560 aa38.54■■■■□ 3.76
VARS-220ENST00000461874 SCRIBQ14160 1630 aa38.18■■■■□ 3.7
VARS-220ENST00000461874 SHROOM4Q9ULL8 1493 aa38.09■■■■□ 3.69
VARS-220ENST00000461874 EIF4G1Q04637 1599 aaKnown RBP37.57■■■■□ 3.6
VARS-220ENST00000461874 CC2D2AQ9P2K1 1620 aa37.55■■■■□ 3.6
VARS-220ENST00000461874 CECR2Q9BXF3 1484 aa37.44■■■■□ 3.58
VARS-220ENST00000461874 NCAPD3P42695 1498 aa36.56■■■■□ 3.44
VARS-220ENST00000461874 ATAD2BQ9ULI0 1458 aa36.48■■■■□ 3.43
VARS-220ENST00000461874 SMARCA4P51532 1647 aa36.47■■■■□ 3.43
VARS-220ENST00000461874 BAZ1AQ9NRL2 1556 aaPredicted RBP36.37■■■■□ 3.41
VARS-220ENST00000461874 SMARCA2P51531 1590 aa36.36■■■■□ 3.41
VARS-220ENST00000461874 HMGXB3Q12766 1538 aa36.26■■■■□ 3.4
VARS-220ENST00000461874 MROH2BQ7Z745 1585 aa36.14■■■■□ 3.38
VARS-220ENST00000461874 PEG3Q9GZU2 1588 aa36.14■■■■□ 3.38
VARS-220ENST00000461874 BAZ1BQ9UIG0 1483 aaKnown RBP36.11■■■■□ 3.37
VARS-220ENST00000461874 ERCC6Q03468 1493 aa35.87■■■■□ 3.33
VARS-220ENST00000461874 NESP48681 1621 aa35.82■■■■□ 3.32
VARS-220ENST00000461874 CUX2O14529 1486 aa35.69■■■■□ 3.3
VARS-220ENST00000461874 WIZO95785 1651 aa35.68■■■■□ 3.3
VARS-220ENST00000461874 LAMC3Q9Y6N6 1575 aa35.6■■■■□ 3.29
VARS-220ENST00000461874 RSF1Q96T23 1441 aaPredicted RBP35.57■■■■□ 3.28
VARS-220ENST00000461874 CADPSQ9ULU8 1353 aa35.47■■■■□ 3.27
VARS-220ENST00000461874 PDS5BQ9NTI5 1447 aa35.45■■■■□ 3.27
VARS-220ENST00000461874 THOC2Q8NI27 1593 aaKnown RBP35.34■■■■□ 3.25
VARS-220ENST00000461874 DNAJC5Q9H3Z4 198 aa35.33■■■■□ 3.25
VARS-220ENST00000461874 TOP2AP11388 1531 aaKnown RBP35.28■■■■□ 3.24
VARS-220ENST00000461874 KIF21AQ7Z4S6 1674 aa35.28■■■■□ 3.24
VARS-220ENST00000461874 CFTRP13569 1480 aa35.12■■■■□ 3.21
VARS-220ENST00000461874 MRC2Q9UBG0 1479 aa35.09■■■■□ 3.21
VARS-220ENST00000461874 FANCD2Q9BXW9 1451 aa35.03■■■■□ 3.2
VARS-220ENST00000461874 CEP164Q9UPV0 1460 aa35.02■■■■□ 3.2
VARS-220ENST00000461874 WDR62O43379 1518 aa34.97■■■■□ 3.19
VARS-220ENST00000461874 CCDC88BA6NC98 1476 aa34.92■■■■□ 3.18
VARS-220ENST00000461874 URB2Q14146 1524 aaKnown RBP34.71■■■■□ 3.15
VARS-220ENST00000461874 PRDM2Q13029 1718 aa34.64■■■■□ 3.14
VARS-220ENST00000461874 TOPBP1Q92547 1522 aa34.4■■■■□ 3.1
VARS-220ENST00000461874 ABCC8Q09428 1581 aa34.36■■■■□ 3.09
VARS-220ENST00000461874 IFT140Q96RY7 1462 aa34.33■■■■□ 3.09
VARS-220ENST00000461874 DNMBPQ6XZF7 1577 aa34.28■■■■□ 3.08
VARS-220ENST00000461874 SUPT5HO00267 1087 aaKnown RBP34.27■■■■□ 3.08
VARS-220ENST00000461874 ZNF608Q9ULD9 1512 aaPredicted RBP34.23■■■■□ 3.07
VARS-220ENST00000461874 OSCARQ8IYS5 282 aa34.18■■■■□ 3.06
VARS-220ENST00000461874 POLA1P09884 1462 aaPredicted RBP34.07■■■■□ 3.05
VARS-220ENST00000461874 TARBP1Q13395 1621 aaKnown RBP34.04■■■■□ 3.04
VARS-220ENST00000461874 EIF4G3O43432 1585 aaKnown RBP33.99■■■■□ 3.03
VARS-220ENST00000461874 AQRO60306 1485 aaKnown RBP eCLIP33.98■■■■□ 3.033e-7■■■■■ 31.4
VARS-220ENST00000461874 SOGA1O94964 1423 aa33.96■■■■□ 3.03
VARS-220ENST00000461874 RAD54L2Q9Y4B4 1467 aa33.95■■■■□ 3.03
VARS-220ENST00000461874 CUX1P39880 1505 aa33.94■■■■□ 3.02
VARS-220ENST00000461874 FGD5Q6ZNL6 1462 aa33.9■■■■□ 3.02
VARS-220ENST00000461874 TRIM41Q8WV44 630 aa33.89■■■■□ 3.02
VARS-220ENST00000461874 TDRD9Q8NDG6 1382 aaKnown RBP33.85■■■■□ 3.01
VARS-220ENST00000461874 WDR97A6NE52 1622 aa33.71■■■□□ 2.99
VARS-220ENST00000461874 FBLN2P98095 1184 aa33.7■■■□□ 2.99
VARS-220ENST00000461874 CHD1O14646 1710 aa33.64■■■□□ 2.98
VARS-220ENST00000461874 SNAPC4Q5SXM2 1469 aa33.62■■■□□ 2.97
VARS-220ENST00000461874 GRIN2BQ13224 1484 aa33.6■■■□□ 2.97
VARS-220ENST00000461874 RIMBP3CA6NJZ7 1639 aa33.59■■■□□ 2.97
VARS-220ENST00000461874 RIMBP3BA6NNM3 1639 aa33.59■■■□□ 2.97
VARS-220ENST00000461874 RIMBP3Q9UFD9 1639 aa33.59■■■□□ 2.97
VARS-220ENST00000461874 ARHGEF11O15085 1522 aa33.57■■■□□ 2.96
VARS-220ENST00000461874 ABCA10Q8WWZ4 1543 aa33.56■■■□□ 2.96
VARS-220ENST00000461874 MAGI1Q96QZ7 1491 aaPredicted RBP33.56■■■□□ 2.96
VARS-220ENST00000461874 GAPVD1Q14C86 1478 aa33.53■■■□□ 2.96
VARS-220ENST00000461874 CHMP7Q8WUX9 453 aaPredicted RBP33.53■■■□□ 2.96
VARS-220ENST00000461874 WRNQ14191 1432 aaPredicted RBP eCLIP33.53■■■□□ 2.96
VARS-220ENST00000461874 TOP2BQ02880 1626 aa33.46■■■□□ 2.95
VARS-220ENST00000461874 SYNJ2O15056 1496 aa33.44■■■□□ 2.94
VARS-220ENST00000461874 BIVM-ERCC5R4GMW8 1640 aa33.43■■■□□ 2.94
VARS-220ENST00000461874 SYNJ1O43426 1573 aa33.43■■■□□ 2.94
VARS-220ENST00000461874 ABCA5Q8WWZ7 1642 aa33.42■■■□□ 2.94
VARS-220ENST00000461874 PBRM1Q86U86 1689 aa33.38■■■□□ 2.93
VARS-220ENST00000461874 CYB5RLQ6IPT4 315 aa33.35■■■□□ 2.93
VARS-220ENST00000461874 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
VARS-220ENST00000461874 ARAP1Q96P48 1450 aa33.27■■■□□ 2.92
VARS-220ENST00000461874 ADAMTS12P58397 1594 aa33.15■■■□□ 2.9
VARS-220ENST00000461874 GRIN2AQ12879 1464 aa33.15■■■□□ 2.9
VARS-220ENST00000461874 FHAD1B1AJZ9 1412 aa33.13■■■□□ 2.89
VARS-220ENST00000461874 ERICH3Q5RHP9 1530 aa33.12■■■□□ 2.89
VARS-220ENST00000461874 NUP160Q12769 1436 aa33.05■■■□□ 2.88
VARS-220ENST00000461874 CEP170Q5SW79 1584 aa32.99■■■□□ 2.87
VARS-220ENST00000461874 KIF27Q86VH2 1401 aa32.87■■■□□ 2.85
VARS-220ENST00000461874 IGF1RP08069 1367 aa32.86■■■□□ 2.85
VARS-220ENST00000461874 TRHP20396 242 aaPredicted RBP32.85■■■□□ 2.85
VARS-220ENST00000461874 ERCC6L2Q5T890 1561 aa32.84■■■□□ 2.85
VARS-220ENST00000461874 SHROOM2Q13796 1616 aa32.8■■■□□ 2.84
VARS-220ENST00000461874 JPH4Q96JJ6 628 aa32.76■■■□□ 2.83
VARS-220ENST00000461874 PRG4Q92954 1404 aaPredicted RBP32.71■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms