Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DMBP28068 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HLA-DMBP28068 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DMBP28068 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC18.1■□□□□ 0.49
HLA-DMBP28068 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DMBP28068 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DMBP28068 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DMBP28068 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.1■□□□□ 0.49
HLA-DMBP28068 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC18.09■□□□□ 0.49
HLA-DMBP28068 AL157400.5-201ENST00000507624 621 ntBASIC18.09■□□□□ 0.49
HLA-DMBP28068 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.09■□□□□ 0.49
HLA-DMBP28068 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DMBP28068 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DMBP28068 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DMBP28068 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DMBP28068 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DMBP28068 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DMBP28068 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DMBP28068 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HLA-DMBP28068 MOB2-207ENST00000614710 705 ntTSL 5 BASIC18.08■□□□□ 0.48
HLA-DMBP28068 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DMBP28068 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DMBP28068 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DMBP28068 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DMBP28068 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DMBP28068 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HLA-DMBP28068 AL139125.2-201ENST00000623134 1869 ntBASIC18.07■□□□□ 0.48
HLA-DMBP28068 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.07■□□□□ 0.48
HLA-DMBP28068 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.07■□□□□ 0.48
HLA-DMBP28068 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DMBP28068 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DMBP28068 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DMBP28068 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DMBP28068 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DMBP28068 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DMBP28068 GPX1-201ENST00000419349 1106 ntBASIC18.06■□□□□ 0.48
HLA-DMBP28068 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC18.06■□□□□ 0.48
HLA-DMBP28068 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC18.05■□□□□ 0.48
HLA-DMBP28068 AC060814.1-201ENST00000554326 538 ntBASIC18.05■□□□□ 0.48
HLA-DMBP28068 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DMBP28068 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DMBP28068 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DMBP28068 AC097639.1-201ENST00000565519 1891 ntBASIC18.04■□□□□ 0.48
HLA-DMBP28068 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DMBP28068 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DMBP28068 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HLA-DMBP28068 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DMBP28068 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DMBP28068 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DMBP28068 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DMBP28068 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DMBP28068 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HLA-DMBP28068 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HLA-DMBP28068 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DMBP28068 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DMBP28068 AC022413.1-201ENST00000624602 984 ntBASIC18.02■□□□□ 0.48
HLA-DMBP28068 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DMBP28068 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DMBP28068 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.01■□□□□ 0.47
HLA-DMBP28068 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
HLA-DMBP28068 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DMBP28068 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC18.01■□□□□ 0.47
HLA-DMBP28068 SLC6A10P-202ENST00000431994 2058 ntBASIC18.01■□□□□ 0.47
HLA-DMBP28068 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DMBP28068 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DMBP28068 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC18■□□□□ 0.47
HLA-DMBP28068 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
HLA-DMBP28068 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DMBP28068 AC025884.2-201ENST00000553429 711 ntBASIC18■□□□□ 0.47
HLA-DMBP28068 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18■□□□□ 0.47
HLA-DMBP28068 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DMBP28068 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC18■□□□□ 0.47
HLA-DMBP28068 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18■□□□□ 0.47
HLA-DMBP28068 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms