RNA–Protein interactions for RNA: ENST00000337392.9

CLPTM1-201, Transcript of CLPTM1, transmembrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLPTM1, Length 2,604 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1-201ENST00000337392 NISCHQ9Y2I1 1504 aa49.69■■■■■ 5.54
CLPTM1-201ENST00000337392 CCDC180Q9P1Z9 1646 aa42.36■■■■■ 4.37
CLPTM1-201ENST00000337392 SHROOM4Q9ULL8 1493 aa42.31■■■■■ 4.36
CLPTM1-201ENST00000337392 ZCCHC6Q5VYS8 1495 aaKnown RBP41.87■■■■■ 4.29
CLPTM1-201ENST00000337392 DCAF8L2P0C7V8 631 aa41.86■■■■■ 4.29
CLPTM1-201ENST00000337392 SUPT5HO00267 1087 aaKnown RBP41.11■■■■■ 4.17
CLPTM1-201ENST00000337392 DCAF1Q9Y4B6 1507 aa40.53■■■■■ 4.08
CLPTM1-201ENST00000337392 ABCC9O60706 1549 aa40.3■■■■■ 4.04
CLPTM1-201ENST00000337392 SCRIBQ14160 1630 aa39.97■■■■□ 3.99
CLPTM1-201ENST00000337392 MYO15BQ96JP2 1530 aa39.55■■■■□ 3.92
CLPTM1-201ENST00000337392 CHIC1Q5VXU3 224 aa39.44■■■■□ 3.9
CLPTM1-201ENST00000337392 NACADO15069 1562 aa39.38■■■■□ 3.9
CLPTM1-201ENST00000337392 RSF1Q96T23 1441 aaPredicted RBP39.14■■■■□ 3.86
CLPTM1-201ENST00000337392 CECR2Q9BXF3 1484 aa39.03■■■■□ 3.84
CLPTM1-201ENST00000337392 RB1CC1Q8TDY2 1594 aa38.95■■■■□ 3.83
CLPTM1-201ENST00000337392 MROH2BQ7Z745 1585 aa38.73■■■■□ 3.79
CLPTM1-201ENST00000337392 PABPN1Q86U42 306 aaKnown RBP eCLIP38.52■■■■□ 3.76
CLPTM1-201ENST00000337392 WIZO95785 1651 aa38.51■■■■□ 3.75
CLPTM1-201ENST00000337392 UNC13AQ9UPW8 1703 aa38.5■■■■□ 3.75
CLPTM1-201ENST00000337392 LOC105371045A0A1W2PR82 267 aa38.46■■■■□ 3.75
CLPTM1-201ENST00000337392 TRIM41Q8WV44 630 aa38.16■■■■□ 3.7
CLPTM1-201ENST00000337392 BAZ1AQ9NRL2 1556 aaPredicted RBP38.15■■■■□ 3.7
CLPTM1-201ENST00000337392 FAM9AQ8IZU1 332 aaPredicted RBP38.09■■■■□ 3.69
CLPTM1-201ENST00000337392 BICRAQ9NZM4 1560 aa38.06■■■■□ 3.68
CLPTM1-201ENST00000337392 EHMT2Q96KQ7 1210 aa38■■■■□ 3.67
CLPTM1-201ENST00000337392 SMARCA4P51532 1647 aa38■■■■□ 3.67
CLPTM1-201ENST00000337392 TOP2AP11388 1531 aaKnown RBP37.7■■■■□ 3.63
CLPTM1-201ENST00000337392 CCDC88BA6NC98 1476 aa37.67■■■■□ 3.62
CLPTM1-201ENST00000337392 PCGF6Q9BYE7 350 aa37.64■■■■□ 3.62
CLPTM1-201ENST00000337392 SMARCA2P51531 1590 aa37.56■■■■□ 3.6
CLPTM1-201ENST00000337392 EIF4G1Q04637 1599 aaKnown RBP37.51■■■■□ 3.6
CLPTM1-201ENST00000337392 ABCC8Q09428 1581 aa37.48■■■■□ 3.59
CLPTM1-201ENST00000337392 ATAD2BQ9ULI0 1458 aa37.22■■■■□ 3.55
CLPTM1-201ENST00000337392 PEG3Q9GZU2 1588 aa37.15■■■■□ 3.54
CLPTM1-201ENST00000337392 BAZ1BQ9UIG0 1483 aaKnown RBP37.09■■■■□ 3.53
CLPTM1-201ENST00000337392 SOGA1O94964 1423 aa36.98■■■■□ 3.51
CLPTM1-201ENST00000337392 PPARGC1BQ86YN6 1023 aaKnown RBP36.94■■■■□ 3.5
CLPTM1-201ENST00000337392 HRCP23327 699 aa36.92■■■■□ 3.5
CLPTM1-201ENST00000337392 RUSC2Q8N2Y8 1516 aa36.89■■■■□ 3.5
CLPTM1-201ENST00000337392 TRIM26Q12899 539 aaPredicted RBP36.82■■■■□ 3.49
CLPTM1-201ENST00000337392 WRNQ14191 1432 aaPredicted RBP eCLIP36.77■■■■□ 3.48
CLPTM1-201ENST00000337392 SYNJ1O43426 1573 aa36.67■■■■□ 3.46
CLPTM1-201ENST00000337392 CSRNP3Q8WYN3 585 aa36.58■■■■□ 3.45
CLPTM1-201ENST00000337392 TTBK1Q5TCY1 1321 aaPredicted RBP36.53■■■■□ 3.44
CLPTM1-201ENST00000337392 NCAPD3P42695 1498 aa36.52■■■■□ 3.44
CLPTM1-201ENST00000337392 UBTFP17480 764 aaKnown RBP36.51■■■■□ 3.43
CLPTM1-201ENST00000337392 HMGXB3Q12766 1538 aa36.4■■■■□ 3.42
CLPTM1-201ENST00000337392 CEP162Q5TB80 1403 aa36.36■■■■□ 3.41
CLPTM1-201ENST00000337392 RANGAP1P46060 587 aaPredicted RBP36.28■■■■□ 3.4
CLPTM1-201ENST00000337392 EEA1Q15075 1411 aa36.26■■■■□ 3.39
CLPTM1-201ENST00000337392 TNIKQ9UKE5 1360 aa36.22■■■■□ 3.39
CLPTM1-201ENST00000337392 GOLGA3Q08378 1498 aa36.16■■■■□ 3.38
CLPTM1-201ENST00000337392 CC2D2AQ9P2K1 1620 aa36.14■■■■□ 3.38
CLPTM1-201ENST00000337392 TOP2BQ02880 1626 aa36.13■■■■□ 3.37
CLPTM1-201ENST00000337392 CFTRP13569 1480 aa36.09■■■■□ 3.37
CLPTM1-201ENST00000337392 CUX1P39880 1505 aa36.07■■■■□ 3.36
CLPTM1-201ENST00000337392 RAPGEF2Q9Y4G8 1499 aa36.06■■■■□ 3.36
CLPTM1-201ENST00000337392 CEP164Q9UPV0 1460 aa36.01■■■■□ 3.35
CLPTM1-201ENST00000337392 BIVM-ERCC5R4GMW8 1640 aa35.96■■■■□ 3.35
CLPTM1-201ENST00000337392 KIF21BO75037 1637 aa35.9■■■■□ 3.34
CLPTM1-201ENST00000337392 CADPSQ9ULU8 1353 aa35.86■■■■□ 3.33
CLPTM1-201ENST00000337392 DNAJC5BQ9UF47 199 aa35.86■■■■□ 3.33
CLPTM1-201ENST00000337392 CLIP1P30622 1438 aa35.82■■■■□ 3.32
CLPTM1-201ENST00000337392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.81■■■■□ 3.32
CLPTM1-201ENST00000337392 NESP48681 1621 aa35.73■■■■□ 3.31
CLPTM1-201ENST00000337392 KIF27Q86VH2 1401 aa35.63■■■■□ 3.29
CLPTM1-201ENST00000337392 PRXQ9BXM0 1461 aa35.62■■■■□ 3.29
CLPTM1-201ENST00000337392 PRDM2Q13029 1718 aa35.6■■■■□ 3.29
CLPTM1-201ENST00000337392 CUX2O14529 1486 aa35.57■■■■□ 3.28
CLPTM1-201ENST00000337392 FANCD2Q9BXW9 1451 aa35.55■■■■□ 3.28
CLPTM1-201ENST00000337392 FGD5Q6ZNL6 1462 aa35.54■■■■□ 3.28
CLPTM1-201ENST00000337392 CCER1Q8TC90 406 aaPredicted RBP35.5■■■■□ 3.27
CLPTM1-201ENST00000337392 VPS8Q8N3P4 1428 aa35.5■■■■□ 3.27
CLPTM1-201ENST00000337392 ZEB1P37275 1124 aaPredicted RBP35.46■■■■□ 3.27
CLPTM1-201ENST00000337392 ERICH3Q5RHP9 1530 aa35.42■■■■□ 3.26
CLPTM1-201ENST00000337392 IGF1RP08069 1367 aa35.41■■■■□ 3.26
CLPTM1-201ENST00000337392 RAD54L2Q9Y4B4 1467 aa35.39■■■■□ 3.26
CLPTM1-201ENST00000337392 HNRNPUL2Q1KMD3 747 aaKnown RBP35.37■■■■□ 3.25
CLPTM1-201ENST00000337392 APLP2Q06481 763 aa35.36■■■■□ 3.25
CLPTM1-201ENST00000337392 ARAP1Q96P48 1450 aa35.34■■■■□ 3.25
CLPTM1-201ENST00000337392 KANK4Q5T7N3 995 aaPredicted RBP35.24■■■■□ 3.23
CLPTM1-201ENST00000337392 CARMIL1Q5VZK9 1371 aa35.23■■■■□ 3.23
CLPTM1-201ENST00000337392 TOPBP1Q92547 1522 aa35.23■■■■□ 3.23
CLPTM1-201ENST00000337392 POLA1P09884 1462 aaPredicted RBP35.21■■■■□ 3.23
CLPTM1-201ENST00000337392 ARHGAP35Q9NRY4 1499 aa35.16■■■■□ 3.22
CLPTM1-201ENST00000337392 DNMBPQ6XZF7 1577 aa35.16■■■■□ 3.22
CLPTM1-201ENST00000337392 P3H3Q8IVL6 736 aa35.14■■■■□ 3.22
CLPTM1-201ENST00000337392 URB2Q14146 1524 aaKnown RBP35.12■■■■□ 3.21
CLPTM1-201ENST00000337392 TDRD9Q8NDG6 1382 aaKnown RBP35.03■■■■□ 3.2
CLPTM1-201ENST00000337392 LAMC3Q9Y6N6 1575 aa35.03■■■■□ 3.2
CLPTM1-201ENST00000337392 ABCA10Q8WWZ4 1543 aa34.98■■■■□ 3.19
CLPTM1-201ENST00000337392 KIF21AQ7Z4S6 1674 aa34.95■■■■□ 3.18
CLPTM1-201ENST00000337392 ATP1B4Q9UN42 357 aaPredicted RBP34.9■■■■□ 3.18
CLPTM1-201ENST00000337392 PDS5BQ9NTI5 1447 aa34.9■■■■□ 3.18
CLPTM1-201ENST00000337392 ITGAEP38570 1179 aa34.81■■■■□ 3.16
CLPTM1-201ENST00000337392 FHOD3Q2V2M9 1422 aa34.77■■■■□ 3.16
CLPTM1-201ENST00000337392 WDR97A6NE52 1622 aa34.7■■■■□ 3.14
CLPTM1-201ENST00000337392 GAPVD1Q14C86 1478 aa34.69■■■■□ 3.14
CLPTM1-201ENST00000337392 ABCA5Q8WWZ7 1642 aa34.61■■■■□ 3.13
CLPTM1-201ENST00000337392 AQRO60306 1485 aaKnown RBP eCLIP34.6■■■■□ 3.131e-6■■■■■ 37
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms