Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 MIR4787-201ENST00000607364 84 ntBASIC22.01■■□□□ 1.11
SNRNP40Q96DI7 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNRNP40Q96DI7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNRNP40Q96DI7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SNRNP40Q96DI7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SNRNP40Q96DI7 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SNRNP40Q96DI7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22■■□□□ 1.11
SNRNP40Q96DI7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
SNRNP40Q96DI7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SNRNP40Q96DI7 MIR935-201ENST00000401179 91 ntBASIC22■■□□□ 1.11
SNRNP40Q96DI7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
SNRNP40Q96DI7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
SNRNP40Q96DI7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC22■■□□□ 1.11
SNRNP40Q96DI7 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 BX664725.1-201ENST00000438252 379 ntBASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SNRNP40Q96DI7 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SNRNP40Q96DI7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
SNRNP40Q96DI7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SNRNP40Q96DI7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SNRNP40Q96DI7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.97■■□□□ 1.11
SNRNP40Q96DI7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SNRNP40Q96DI7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 AC022616.5-201ENST00000518796 181 ntBASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SNRNP40Q96DI7 ABCB10P1-201ENST00000614297 2181 ntBASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
SNRNP40Q96DI7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SNRNP40Q96DI7 UNC93B8-201ENST00000511903 705 ntBASIC21.94■■□□□ 1.1
SNRNP40Q96DI7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SNRNP40Q96DI7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.93■■□□□ 1.1
SNRNP40Q96DI7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 KRT18P10-201ENST00000388836 1287 ntBASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 KRT16P3-201ENST00000439127 1283 ntBASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SNRNP40Q96DI7 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SNRNP40Q96DI7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 KRT18P24-201ENST00000344739 1156 ntBASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SNRNP40Q96DI7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.1
SNRNP40Q96DI7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SNRNP40Q96DI7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.89■■□□□ 1.09
SNRNP40Q96DI7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SNRNP40Q96DI7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.89■■□□□ 1.09
SNRNP40Q96DI7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
SNRNP40Q96DI7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.88■■□□□ 1.09
SNRNP40Q96DI7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SNRNP40Q96DI7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
SNRNP40Q96DI7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms