RNA–Protein interactions for RNA: ENST00000611255.4

LRMDA-215, Transcript of leucine rich melanocyte differentiation associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LRMDA, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRMDA-215ENST00000611255 NISCHQ9Y2I1 1504 aa57.02■■■■■ 6.72
LRMDA-215ENST00000611255 ABCC9O60706 1549 aa51.55■■■■■ 5.84
LRMDA-215ENST00000611255 CCDC180Q9P1Z9 1646 aa51.23■■■■■ 5.79
LRMDA-215ENST00000611255 RB1CC1Q8TDY2 1594 aa48.91■■■■■ 5.42
LRMDA-215ENST00000611255 DNAJC5BQ9UF47 199 aa48.71■■■■■ 5.39
LRMDA-215ENST00000611255 NACADO15069 1562 aa48.53■■■■■ 5.36
LRMDA-215ENST00000611255 DCAF8L2P0C7V8 631 aa48.25■■■■■ 5.31
LRMDA-215ENST00000611255 PABPN1Q86U42 306 aaKnown RBP eCLIP47.99■■■■■ 5.27
LRMDA-215ENST00000611255 UNC13AQ9UPW8 1703 aa47.82■■■■■ 5.25
LRMDA-215ENST00000611255 MYO15BQ96JP2 1530 aa47.78■■■■■ 5.24
LRMDA-215ENST00000611255 BICRAQ9NZM4 1560 aa47.56■■■■■ 5.2
LRMDA-215ENST00000611255 ZCCHC6Q5VYS8 1495 aaKnown RBP47.18■■■■■ 5.14
LRMDA-215ENST00000611255 DCAF1Q9Y4B6 1507 aa47.07■■■■■ 5.13
LRMDA-215ENST00000611255 SHROOM4Q9ULL8 1493 aa46.82■■■■■ 5.09
LRMDA-215ENST00000611255 SCRIBQ14160 1630 aa46.67■■■■■ 5.06
LRMDA-215ENST00000611255 CC2D2AQ9P2K1 1620 aa46.55■■■■■ 5.04
LRMDA-215ENST00000611255 CECR2Q9BXF3 1484 aa46.46■■■■■ 5.03
LRMDA-215ENST00000611255 EIF4G1Q04637 1599 aaKnown RBP46.38■■■■■ 5.01
LRMDA-215ENST00000611255 DNAJC5Q9H3Z4 198 aa44.89■■■■■ 4.78
LRMDA-215ENST00000611255 NCAPD3P42695 1498 aa44.85■■■■■ 4.77
LRMDA-215ENST00000611255 ATAD2BQ9ULI0 1458 aa44.66■■■■■ 4.74
LRMDA-215ENST00000611255 CUX2O14529 1486 aa44.53■■■■■ 4.72
LRMDA-215ENST00000611255 SMARCA4P51532 1647 aa44.52■■■■■ 4.72
LRMDA-215ENST00000611255 ERCC6Q03468 1493 aa44.48■■■■■ 4.71
LRMDA-215ENST00000611255 SMARCA2P51531 1590 aa44.48■■■■■ 4.71
LRMDA-215ENST00000611255 HMGXB3Q12766 1538 aa44.44■■■■■ 4.7
LRMDA-215ENST00000611255 BAZ1AQ9NRL2 1556 aaPredicted RBP44.24■■■■■ 4.67
LRMDA-215ENST00000611255 NESP48681 1621 aa44.23■■■■■ 4.67
LRMDA-215ENST00000611255 BAZ1BQ9UIG0 1483 aaKnown RBP44.17■■■■■ 4.66
LRMDA-215ENST00000611255 PEG3Q9GZU2 1588 aa44.09■■■■■ 4.65
LRMDA-215ENST00000611255 MROH2BQ7Z745 1585 aa43.94■■■■■ 4.62
LRMDA-215ENST00000611255 LAMC3Q9Y6N6 1575 aa43.83■■■■■ 4.61
LRMDA-215ENST00000611255 THOC2Q8NI27 1593 aaKnown RBP43.8■■■■■ 4.6
LRMDA-215ENST00000611255 KIF21AQ7Z4S6 1674 aa43.6■■■■■ 4.57
LRMDA-215ENST00000611255 PDS5BQ9NTI5 1447 aa43.6■■■■■ 4.57
LRMDA-215ENST00000611255 CADPSQ9ULU8 1353 aa43.47■■■■■ 4.55
LRMDA-215ENST00000611255 WIZO95785 1651 aa43.38■■■■■ 4.54
LRMDA-215ENST00000611255 MRC2Q9UBG0 1479 aa43.23■■■■■ 4.51
LRMDA-215ENST00000611255 WDR62O43379 1518 aa43.14■■■■■ 4.5
LRMDA-215ENST00000611255 CEP164Q9UPV0 1460 aa43■■■■■ 4.47
LRMDA-215ENST00000611255 FANCD2Q9BXW9 1451 aa42.94■■■■■ 4.47
LRMDA-215ENST00000611255 RSF1Q96T23 1441 aaPredicted RBP42.94■■■■■ 4.46
LRMDA-215ENST00000611255 CFTRP13569 1480 aa42.91■■■■■ 4.46
LRMDA-215ENST00000611255 TOP2AP11388 1531 aaKnown RBP42.8■■■■■ 4.44
LRMDA-215ENST00000611255 TRIM41Q8WV44 630 aa42.76■■■■■ 4.44
LRMDA-215ENST00000611255 URB2Q14146 1524 aaKnown RBP42.63■■■■■ 4.42
LRMDA-215ENST00000611255 OSCARQ8IYS5 282 aa42.49■■■■■ 4.39
LRMDA-215ENST00000611255 PRDM2Q13029 1718 aa42.38■■■■■ 4.38
LRMDA-215ENST00000611255 CCDC88BA6NC98 1476 aa42.36■■■■■ 4.37
LRMDA-215ENST00000611255 IFT140Q96RY7 1462 aa42.17■■■■■ 4.34
LRMDA-215ENST00000611255 ZNF608Q9ULD9 1512 aaPredicted RBP42.15■■■■■ 4.34
LRMDA-215ENST00000611255 TOPBP1Q92547 1522 aa42.11■■■■■ 4.33
LRMDA-215ENST00000611255 ABCC8Q09428 1581 aa41.98■■■■■ 4.31
LRMDA-215ENST00000611255 RIMBP3CA6NJZ7 1639 aa41.93■■■■■ 4.3
LRMDA-215ENST00000611255 RIMBP3BA6NNM3 1639 aa41.93■■■■■ 4.3
LRMDA-215ENST00000611255 RIMBP3Q9UFD9 1639 aa41.93■■■■■ 4.3
LRMDA-215ENST00000611255 DNMBPQ6XZF7 1577 aa41.91■■■■■ 4.3
LRMDA-215ENST00000611255 EIF4G3O43432 1585 aaKnown RBP41.85■■■■■ 4.29
LRMDA-215ENST00000611255 ARHGEF11O15085 1522 aa41.78■■■■■ 4.28
LRMDA-215ENST00000611255 TARBP1Q13395 1621 aaKnown RBP41.77■■■■■ 4.28
LRMDA-215ENST00000611255 AQRO60306 1485 aaKnown RBP eCLIP41.75■■■■■ 4.27
LRMDA-215ENST00000611255 POLA1P09884 1462 aaPredicted RBP41.66■■■■■ 4.26
LRMDA-215ENST00000611255 CHD1O14646 1710 aa41.6■■■■■ 4.25
LRMDA-215ENST00000611255 RAD54L2Q9Y4B4 1467 aa41.54■■■■■ 4.24
LRMDA-215ENST00000611255 CYB5RLQ6IPT4 315 aa41.52■■■■■ 4.24
LRMDA-215ENST00000611255 FBLN2P98095 1184 aa41.5■■■■■ 4.23
LRMDA-215ENST00000611255 SOGA1O94964 1423 aa41.48■■■■■ 4.23
LRMDA-215ENST00000611255 TDRD9Q8NDG6 1382 aaKnown RBP41.44■■■■■ 4.22
LRMDA-215ENST00000611255 ARAP1Q96P48 1450 aa41.36■■■■■ 4.21
LRMDA-215ENST00000611255 FGD5Q6ZNL6 1462 aa41.35■■■■■ 4.21
LRMDA-215ENST00000611255 CUX1P39880 1505 aa41.29■■■■■ 4.2
LRMDA-215ENST00000611255 SNAPC4Q5SXM2 1469 aa41.28■■■■■ 4.2
LRMDA-215ENST00000611255 WDR97A6NE52 1622 aa41.27■■■■■ 4.2
LRMDA-215ENST00000611255 CHMP7Q8WUX9 453 aaPredicted RBP41.16■■■■■ 4.18
LRMDA-215ENST00000611255 CLASP1Q7Z460 1538 aa41.15■■■■■ 4.18
LRMDA-215ENST00000611255 MAGI1Q96QZ7 1491 aaPredicted RBP41.15■■■■■ 4.18
LRMDA-215ENST00000611255 GRIN2BQ13224 1484 aa41.13■■■■■ 4.17
LRMDA-215ENST00000611255 TRHP20396 242 aaPredicted RBP41.11■■■■■ 4.17
LRMDA-215ENST00000611255 SYNJ1O43426 1573 aa41.06■■■■■ 4.16
LRMDA-215ENST00000611255 SYNJ2O15056 1496 aa41.02■■■■■ 4.16
LRMDA-215ENST00000611255 GAPVD1Q14C86 1478 aa40.96■■■■■ 4.15
LRMDA-215ENST00000611255 PBRM1Q86U86 1689 aa40.91■■■■■ 4.14
LRMDA-215ENST00000611255 ABCA10Q8WWZ4 1543 aa40.88■■■■■ 4.14
LRMDA-215ENST00000611255 ABCA5Q8WWZ7 1642 aa40.82■■■■■ 4.13
LRMDA-215ENST00000611255 SUPT5HO00267 1087 aaKnown RBP40.82■■■■■ 4.13
LRMDA-215ENST00000611255 WRNQ14191 1432 aaPredicted RBP eCLIP40.65■■■■■ 4.1
LRMDA-215ENST00000611255 GRIN2AQ12879 1464 aa40.6■■■■■ 4.09
LRMDA-215ENST00000611255 TOP2BQ02880 1626 aa40.53■■■■■ 4.08
LRMDA-215ENST00000611255 BIVM-ERCC5R4GMW8 1640 aa40.53■■■■■ 4.08
LRMDA-215ENST00000611255 ADAMTS12P58397 1594 aa40.52■■■■■ 4.08
LRMDA-215ENST00000611255 ERCC6L2Q5T890 1561 aa40.52■■■■■ 4.08
LRMDA-215ENST00000611255 NUP160Q12769 1436 aa40.5■■■■■ 4.07
LRMDA-215ENST00000611255 CEP170Q5SW79 1584 aa40.48■■■■■ 4.07
LRMDA-215ENST00000611255 FHAD1B1AJZ9 1412 aa40.42■■■■■ 4.06
LRMDA-215ENST00000611255 ERICH3Q5RHP9 1530 aa40.35■■■■■ 4.05
LRMDA-215ENST00000611255 SHROOM2Q13796 1616 aa40.33■■■■■ 4.05
LRMDA-215ENST00000611255 PRG4Q92954 1404 aaPredicted RBP40.12■■■■■ 4.01
LRMDA-215ENST00000611255 JPH4Q96JJ6 628 aa40.11■■■■■ 4.01
LRMDA-215ENST00000611255 AEBP2Q6ZN18 517 aaPredicted RBP40.1■■■■■ 4.01
LRMDA-215ENST00000611255 RUSC2Q8N2Y8 1516 aa39.96■■■■□ 3.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms