Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 PPP6R3-203ENST00000393800 5093 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.613e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-202ENST00000265637 4783 ntTSL 5 BASIC10.96□□□□□ -0.653e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-219ENST00000529907 826 ntTSL 510.35□□□□□ -0.753e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-224ENST00000533127 551 ntTSL 410.35□□□□□ -0.753e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC8.83□□□□□ -13e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.13e-6■■□□□ 12.8
DDX42Q86XP3 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.051e-6■■□□□ 12.8
DDX42Q86XP3 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.181e-6■■□□□ 12.8
DDX42Q86XP3 TRIM25-205ENST00000572021 1555 ntTSL 1 (best)12.44□□□□□ -0.421e-6■■□□□ 12.8
DDX42Q86XP3 RTN4-210ENST00000427710 589 ntTSL 415.63■□□□□ 0.091e-6■■□□□ 12.7
DDX42Q86XP3 WARS-220ENST00000554950 1376 ntTSL 210.14□□□□□ -0.791e-8■■□□□ 12.7
DDX42Q86XP3 EGFL7-206ENST00000492002 654 ntTSL 524.63■■□□□ 1.536e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.066e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.996e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.916e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.656e-8■■□□□ 12.6
DDX42Q86XP3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.77■□□□□ 0.442e-6■■□□□ 12.5
DDX42Q86XP3 CCNL2-210ENST00000473872 557 ntTSL 213.54□□□□□ -0.242e-6■■□□□ 12.5
DDX42Q86XP3 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.46□□□□□ -1.217e-7■■□□□ 12.5
DDX42Q86XP3 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.57■□□□□ 0.081e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC14.73□□□□□ -0.051e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC14.43□□□□□ -0.11e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC14.19□□□□□ -0.141e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-201ENST00000201963 4255 ntTSL 1 (best) BASIC12.47□□□□□ -0.411e-10■■□□□ 12.4
DDX42Q86XP3 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.481e-10■■□□□ 12.4
DDX42Q86XP3 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.641e-10■■□□□ 12.4
DDX42Q86XP3 VCL-207ENST00000624354 3307 ntTSL 29.47□□□□□ -0.891e-10■■□□□ 12.4
DDX42Q86XP3 VCL-206ENST00000623461 7995 ntTSL 1 (best)9.4□□□□□ -0.91e-10■■□□□ 12.4
DDX42Q86XP3 OAZ1-204ENST00000588673 780 ntTSL 321.47■■□□□ 1.035e-11■■□□□ 12.4
DDX42Q86XP3 SCART1-205ENST00000488261 4709 ntTSL 220.39■□□□□ 0.864e-8■■□□□ 12.4
DDX42Q86XP3 SCART1-204ENST00000482993 4904 ntTSL 220.25■□□□□ 0.834e-8■■□□□ 12.4
DDX42Q86XP3 SCART1-202ENST00000463137 4756 ntTSL 219.85■□□□□ 0.774e-8■■□□□ 12.4
DDX42Q86XP3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.384e-8■■□□□ 12.4
DDX42Q86XP3 TMC6-209ENST00000588087 2384 ntTSL 223.48■■□□□ 1.353e-6■■□□□ 12.4
DDX42Q86XP3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.8■■□□□ 1.243e-6■■□□□ 12.4
DDX42Q86XP3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.67■□□□□ 0.93e-6■■□□□ 12.4
DDX42Q86XP3 EIF4A1-206ENST00000577929 696 ntTSL 220.01■□□□□ 0.791e-7■■□□□ 12.4
DDX42Q86XP3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.733e-6■■□□□ 12.4
DDX42Q86XP3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.631e-7■■□□□ 12.4
DDX42Q86XP3 PPIF-203ENST00000472580 761 ntTSL 517.81■□□□□ 0.441e-7■■□□□ 12.4
DDX42Q86XP3 PPIF-205ENST00000498681 518 ntTSL 217.81■□□□□ 0.441e-7■■□□□ 12.4
DDX42Q86XP3 TMC6-224ENST00000593044 3070 ntTSL 217.44■□□□□ 0.383e-6■■□□□ 12.4
DDX42Q86XP3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.263e-6■■□□□ 12.4
DDX42Q86XP3 PPIF-202ENST00000448165 821 ntTSL 216.44■□□□□ 0.221e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-210ENST00000465814 5612 ntTSL 215.71■□□□□ 0.19e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-208ENST00000452383 994 ntTSL 315.67■□□□□ 0.19e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.059e-9■■□□□ 12.4
DDX42Q86XP3 EIF4A1-219ENST00000581770 447 ntTSL 214.78□□□□□ -0.041e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.19e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.149e-9■■□□□ 12.4
DDX42Q86XP3 USP20-207ENST00000491731 821 ntTSL 213.91□□□□□ -0.181e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.29e-9■■□□□ 12.4
DDX42Q86XP3 USP20-205ENST00000474895 825 ntTSL 513.66□□□□□ -0.221e-7■■□□□ 12.4
DDX42Q86XP3 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.261e-7■■□□□ 12.4
DDX42Q86XP3 EIF4A1-205ENST00000577738 531 ntTSL 213.4□□□□□ -0.261e-7■■□□□ 12.4
DDX42Q86XP3 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.261e-7■■□□□ 12.4
DDX42Q86XP3 USP20-203ENST00000372429 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.321e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-205ENST00000426523 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.539e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-207ENST00000429686 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.629e-9■■□□□ 12.4
DDX42Q86XP3 EIF4A1-217ENST00000581384 642 ntTSL 510.33□□□□□ -0.761e-7■■□□□ 12.4
DDX42Q86XP3 CALR-205ENST00000587486 957 ntTSL 217.62■□□□□ 0.418e-7■■□□□ 12.3
DDX42Q86XP3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.238e-7■■□□□ 12.3
DDX42Q86XP3 CALR-207ENST00000590325 781 ntTSL 215□□□□□ -0.018e-7■■□□□ 12.3
DDX42Q86XP3 CALR-206ENST00000588454 776 ntTSL 311.81□□□□□ -0.528e-7■■□□□ 12.3
DDX42Q86XP3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.552e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.98■■□□□ 1.432e-6■■□□□ 12.3
DDX42Q86XP3 GPCPD1-206ENST00000481690 819 ntTSL 323.53■■□□□ 1.362e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-225ENST00000473680 1232 ntTSL 223.05■■□□□ 1.282e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.222e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-204ENST00000378332 1982 ntTSL 222.13■■□□□ 1.132e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-211ENST00000566973 442 ntTSL 221.68■■□□□ 1.062e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-221ENST00000466074 1564 ntTSL 221.17■□□□□ 0.982e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-208ENST00000422811 771 ntTSL 321.01■□□□□ 0.952e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.852e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-207ENST00000470046 1211 ntTSL 219.59■□□□□ 0.732e-6■■□□□ 12.3
DDX42Q86XP3 ANAPC2-207ENST00000495611 747 ntTSL 219.57■□□□□ 0.722e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-231ENST00000488994 1437 ntTSL 219.03■□□□□ 0.642e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-224ENST00000472324 2143 ntTSL 1 (best)19.01■□□□□ 0.632e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-206ENST00000427222 1811 ntTSL 518.81■□□□□ 0.62e-6■■□□□ 12.3
DDX42Q86XP3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.582e-6■■□□□ 12.3
DDX42Q86XP3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.582e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.58■□□□□ 0.572e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-230ENST00000488168 976 ntTSL 318.41■□□□□ 0.542e-6■■□□□ 12.3
DDX42Q86XP3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.42e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-222ENST00000466638 1204 ntTSL 217.36■□□□□ 0.372e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.06■□□□□ 0.322e-6■■□□□ 12.3
DDX42Q86XP3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.112e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.072e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.072e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.062e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-232ENST00000489536 836 ntTSL 215.39■□□□□ 0.052e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-214ENST00000439087 754 ntTSL 515.35■□□□□ 0.052e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-211ENST00000433470 717 ntTSL 514.94□□□□□ -0.022e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.052e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-205ENST00000401672 2199 ntTSL 214.43□□□□□ -0.12e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.112e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.22e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-201ENST00000216061 3415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.342e-6■■□□□ 12.3
DDX42Q86XP3 RNF213-202ENST00000411702 6428 ntTSL 212.4□□□□□ -0.422e-6■■□□□ 12.3
Retrieved 100 of 2,477 protein–RNA pairs in 146.2 ms